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[179342_at]

Description F57B1.7 /REP_DB=WormBase Gene ID /WP=CE11298 /TR=Q20920 /GB=CAB01507.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 92      6grp_total > 84      4grp_total > 02      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1533
1 2 3 4 range
A 186.3
(-2.7)
P 		134.7
(-2.9)
A 		113.4
(-3)
A 		1573.3
(3)
P 		1460
B 140
(-2.9)
P 		108.6
(-3)
A 		105.3
(-3)
A 		1585.9
(3)
P 		1481
C 200
(-2.3)
P 		138.7
(-2.6)
P 		52.9
(-3)
A 		1384.2
(3)
P 		1331
avr 175.4
(-2.6) 		127.3
(-2.8) 		90.5
(-3) 		1514.5
(3) 		1424

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1177
1 2 3 4 5 6 range
A 106.8
(-3)
P 		114.6
(-3)
P 		189.9
(-2.5)
P 		1006.2
(2.2)
P 		1147.1
(3)
P 		1028.3
(2.3)
P 		1040
B 103.2
(-3)
P 		111.8
(-2.9)
A 		130.5
(-2.8)
P 		980.3
(2.2)
P 		1113.2
(3)
P 		760.4
(0.9)
P 		1010
C 138.8
(-3)
P 		139.4
(-3)
P 		293.8
(-2.2)
P 		863
(0.8)
P 		1280.4
(3)
P 		604.9
(-0.6)
P 		1142
avr 116.3
(-3) 		121.9
(-3) 		204.7
(-2.5) 		949.8
(1.7) 		1180.2
(3) 		797.9
(0.8) 		1064
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 67.8
(-1.8)
P 		29.2
(-3)
A 		29.7
(-3)
A 		230.3
(3)
P 		201
B 44.7
(-2.6)
P 		26.8
(-3)
A 		24.4
(-3)
A 		338
(3)
P 		314
C 66.2
(-1.7)
P 		39.9
(-2.4)
P 		18.4
(-3)
A 		233.4
(3)
P 		215
avr 59.6
(-2.1) 		32
(-2.8) 		24.2
(-3) 		267.2
(3) 		243

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 19.7
(-3)
P 		40.8
(-2.6)
P 		41.4
(-2.6)
P 		255.2
(1.3)
P 		346.2
(3)
P 		250.4
(1.2)
P 		327
B 35.9
(-2.9)
P 		37.2
(-2.9)
A 		31.7
(-3)
P 		259.7
(0.3)
P 		452.3
(3)
P 		283.5
(0.6)
P 		421
C 51.5
(-2.9)
P 		42.5
(-3)
P 		74.8
(-2.5)
P 		173.6
(-0.9)
P 		414.3
(3)
P 		202.5
(-0.4)
P 		372
avr 35.7
(-3) 		40.2
(-2.9) 		49.3
(-2.8) 		229.5
(0.2) 		404.3
(3) 		245.5
(0.4) 		369
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179342_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14572
Sequence Type Exemplar sequence
Representative Public ID F57B1.7 NCBI
Target Description F57B1.7 /REP_DB=WormBase Gene ID /WP=CE11298 /TR=Q20920 /GB=CAB01507.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073886(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073886 NCBI Caenorhabditis elegans F57B1.7 (F57B1.7) mRNA, complete cds. 11/11 None
SNAP00000007054 ENSEMBL cdna:SNAP chromosome:CEL140:V:13225413:13226036:-1 9/11 None
GENEFINDER00000007056 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13225221:13226066:-1 11/11 None
F57B1.7 ENSEMBL cdna:known chromosome:CEL140:V:13225221:13226036:-1 gene:F57B1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13225220-13226036(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57B1.7
Entrez Gene 186436 Entrez gene
SwissProt Q20920 EMBL-EBI
WormBase CE11298 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01507 Hypothetical protein F57B1.7 [Caenorhabditis elegans] ref|NP_506287.1| F57B1.7 [Caenorhabditis elegans] 3.0E-86
blast CAB01507 Hypothetical protein F57B1.7 [Caenorhabditis elegans] ref|NP_506287.1| F57B1.7 [Caenorhabditis elegans] 8.0E-56
blast CAE64646 Hypothetical protein CBG09413 [Caenorhabditis briggsae] 3.0E-23
blast CAE64646 Hypothetical protein CBG09413 [Caenorhabditis briggsae] 4.0E-18
blast CAE64646 Hypothetical protein CBG09413 [Caenorhabditis briggsae] 6.0E-18
Sequence
Target Sequence 
>C. ELEGANS:179342_AT
tgctatcatctcctacatcatcggatgcttcgtcctgtagcccatcaatgccattcacgc
catcaattccaatgttcatgccaacatcagctgattgctcaccaacgacacaaacgccca
cgtcaagcattccttcatcaatcgcctcaacatctccactgatgacctctctaccactta
gattgtcaggattccccctcttaaacatcagggatcccagtgcagaagcttctctgctaa
acctcggatgcaatgccgatgcagccgcccttctcaagacaatccttgatcagtacagaa
tgctcgaagaggcaagcatgtcaatgtcttcaagtccatcaaaagatgatgagagtggag
atgaagattcagatggtctcaattcaaacagtattattgatgtcattacagactatccca
ttttttgtctgtcccgcgctttcgtcctctcaaactatccacgtttccacccaccacttc
atcttaccctcgattgtgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTATCATCTCCTACATCATCGGA 73 581 173 Antisense
CATCAGCTGATTGCTCACCAACGAC 559 213 257 Antisense
CACGTCAAGCATTCCTTCATCAATC 450 199 291 Antisense
TCAACATCTCCACTGATGACCTCTC 101 631 319 Antisense
TGACCTCTCTACCACTTAGATTGTC 76 571 335 Antisense
GGATTCCCCCTCTTAAACATCAGGG 17 507 361 Antisense
CAGGGATCCCAGTGCAGAAGCTTCT 129 207 381 Antisense
CAGAAGCTTCTCTGCTAAACCTCGG 384 203 395 Antisense
TCGGATGCAATGCCGATGCAGCCGC 593 605 416 Antisense
GACTATCCCATTTTTTGTCTGTCCC 19 373 583 Antisense
CTTCATCTTACCCTCGATTGTGATT 461 219 649 Antisense
Sequence Source Affymetrix Proprietary Database