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[179341_at]

Description F15D4.2 /REP_DB=WormBase Gene ID /WP=CE09415 /TR=Q93510 /GB=CAB02485.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 85      6grp_total > 76      4grp_total > 03      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2878
1 2 3 4 range
A 586.5
(-2.4)
P 		387.8
(-2.8)
P 		307.4
(-3)
P 		3120.1
(3)
P 		2813
B 540
(-2.3)
P 		358.4
(-2.7)
P 		242.1
(-3)
P 		2883.8
(3)
P 		2642
C 519.6
(-2.4)
P 		396.1
(-2.7)
P 		280.7
(-3)
P 		2735.9
(3)
P 		2455
avr 548.7
(-2.4) 		380.8
(-2.8) 		276.7
(-3) 		2913.3
(3) 		2637

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 587
1 2 3 4 5 6 range
A 779.7
(3)
P 		586.3
(-3)
P 		700.8
(0.6)
P 		708
(0.8)
P 		694.3
(0.4)
P 		760.7
(2.4)
P 		193
B 704.4
(-3)
P 		738.7
(-1.8)
P 		761.5
(-1)
P 		706.3
(-2.9)
P 		810
(0.7)
P 		876.5
(3)
P 		172
C 468.3
(-3)
P 		722
(-0.4)
P 		656.6
(-1.1)
P 		806.1
(0.5)
P 		628.3
(-1.4)
P 		1055.1
(3)
P 		587
avr 650.8
(-3) 		682.3
(-2.2) 		706.3
(-1.6) 		740.1
(-0.8) 		710.9
(-1.5) 		897.4
(3) 		247
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 558
1 2 3 4 range
A 213.6
(-0.9)
P 		84.2
(-2.9)
P 		80.4
(-3)
P 		456.7
(3)
P 		376
B 172.2
(-1.8)
P 		88.5
(-2.7)
P 		56.1
(-3)
P 		614.5
(3)
P 		558
C 172
(-1.8)
P 		113.9
(-2.7)
P 		97.8
(-3)
P 		461.3
(3)
P 		364
avr 185.9
(-1.5) 		95.5
(-2.8) 		78.1
(-3) 		510.8
(3) 		433

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 143.7
(-3)
P 		208.5
(2.9)
P 		152.6
(-2.2)
P 		179.6
(0.3)
P 		209.5
(3)
P 		185.2
(0.8)
P 		66
B 245.1
(-0.5)
P 		245.9
(-0.5)
P 		184.9
(-3)
P 		187.1
(-2.9)
P 		329.1
(3)
P 		326.8
(2.9)
P 		144
C 173.6
(-2.6)
P 		220.3
(-1.2)
P 		167.1
(-2.8)
P 		162.1
(-3)
P 		203.3
(-1.7)
P 		353.2
(3)
P 		191
avr 187.5
(-2) 		224.9
(-0.2) 		168.2
(-3) 		176.3
(-2.6) 		247.3
(0.9) 		288.4
(3) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179341_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2760
Sequence Type Exemplar sequence
Representative Public ID F15D4.2 NCBI
Target Description F15D4.2 /REP_DB=WormBase Gene ID /WP=CE09415 /TR=Q93510 /GB=CAB02485.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064402(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064402 NCBI Caenorhabditis elegans F15D4.2 (F15D4.2) mRNA, complete cds. 11/11 None
SNAP00000038512 ENSEMBL cdna:SNAP chromosome:CEL140:II:13215992:13216598:1 11/11 None
GENEFINDER00000038525 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13215992:13216598:1 11/11 None
F15D4.2.1 ENSEMBL cdna:known chromosome:CEL140:II:13215986:13216651:1 gene:F15D4.2 11/11 None
F15D4.2.2 ENSEMBL cdna:known chromosome:CEL140:II:13215988:13216598:1 gene:F15D4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13215988-13216595(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15D4.2
Entrez Gene 174966 Entrez gene
SwissProt Q93510 EMBL-EBI
WormBase CE09415 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02485 Hypothetical protein F15D4.2 [Caenorhabditis elegans] ref|NP_496803.1| F15D4.2 [Caenorhabditis elegans] 6.0E-52
blast CAE59444 Hypothetical protein CBG02817 [Caenorhabditis briggsae] 2.0E-28
Sequence
Target Sequence 
>C. ELEGANS:179341_AT
gaccaagtggatccacttctcgcctcactctcgcatttcgtagatcacacggatttgctc
gccgagcacacgatgaatgctgtcgagtgggaagctgtcgaggtgctgatgccacgaatt
ctacggggaaaatcgaaggaagacgtaaagcagctgctgttagcagagattgacggaatg
tctaaaaagaggttggatgcagtgttggctggagagacactggaagaatcgtcgagctct
gaggatgaggaggagcaagtgattggctccgctggagaatcggaaaaatctgaaagccca
gagatccctgagcctgaagccaaaatggaggagcaggctgtagaagctgcagaagcttct
gaagcttcagatgatggaagagaggacggtgaaattagagatgatcagggaaacacgacg
tcaacaccgcctgatccaggatccccaaagtcaccagaaaagggagaagccgagcaactg
gacactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCAAGTGGATCCACTTCTCGCCT 410 383 28 Antisense
CTCACTCTCGCATTTCGTAGATCAC 215 229 51 Antisense
CGTAGATCACACGGATTTGCTCGCC 513 247 66 Antisense
GAAGCTGTCGAGGTGCTGATGCCAC 347 343 118 Antisense
GCTGATGCCACGAATTCTACGGGGA 280 295 132 Antisense
GAGCAAGTGATTGGCTCCGCTGGAG 368 391 280 Antisense
CTGAAAGCCCAGAGATCCCTGAGCC 159 239 317 Antisense
GATCCCTGAGCCTGAAGCCAAAATG 636 415 330 Antisense
CAGGGAAACACGACGTCAACACCGC 449 207 433 Antisense
CGCCTGATCCAGGATCCCCAAAGTC 614 257 455 Antisense
GAGAAGCCGAGCAACTGGACACTGA 691 391 491 Antisense
Sequence Source Affymetrix Proprietary Database