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[179340_at]

Description F28H6.7 /REP_DB=WormBase Gene ID /WP=CE18652 /TR=Q9XX96 /GB=CAA20931.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 24.1
(-3)
A 		44.9
(-0.2)
A 		46.8
(0)
A 		69
(3)
A 		45
B 4.7
(-3)
A 		15.1
(-1.2)
A 		23.3
(0.2)
A 		39.8
(3)
A 		35
C 28.1
(-3)
A 		33.6
(-2.5)
A 		29.6
(-2.9)
A 		99.4
(3)
P 		71
avr 19
(-3) 		31.2
(-1.5) 		33.2
(-1.3) 		69.4
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 17.7
(-0.4)
A 		9.8
(-1.7)
A 		32.3
(2)
A 		38.1
(3)
A 		2.2
(-3)
A 		15.1
(-0.8)
A 		36
B 14.9
(-1.4)
A 		12
(-2.3)
A 		26.3
(2.1)
A 		29.1
(3)
A 		23.1
(1.1)
A 		9.8
(-3)
A 		19
C 21.8
(-0.8)
A 		17.3
(-2)
A 		26.2
(0.4)
A 		13.5
(-3)
A 		31.1
(1.8)
A 		35.7
(3)
A 		22
avr 18.1
(-1) 		13
(-3) 		28.3
(3) 		26.9
(2.5) 		18.8
(-0.7) 		20.2
(-0.2) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 8.8
(-3)
A 		9.7
(-1.4)
A 		12.2
(3)
A 		10.1
(-0.7)
A 		3
B 1.5
(-3)
A 		3.7
(-1.1)
A 		5.4
(0.3)
A 		8.5
(3)
A 		7
C 9.3
(-3)
A 		9.7
(-2.7)
A 		10.3
(-2.2)
A 		16.8
(3)
P 		8
avr 6.5
(-3) 		7.7
(-1.6) 		9.3
(0.2) 		11.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.3
(-1.3)
A 		3.5
(-1.1)
A 		7
(1.2)
A 		9.7
(3)
A 		0.7
(-3)
A 		3.7
(-1)
A 		9
B 5.2
(-1.3)
A 		4
(-2.6)
A 		6.4
(-0.1)
A 		7.7
(1.2)
A 		9.4
(3)
A 		3.6
(-3)
A 		6
C 8.1
(0.5)
A 		5.3
(-1.3)
A 		6.7
(-0.4)
A 		2.7
(-3)
A 		10.1
(1.8)
A 		12
(3)
A 		9
avr 5.5
(0) 		4.3
(-3) 		6.7
(3) 		6.7
(3) 		6.7
(3) 		6.4
(2.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179340_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17397
Sequence Type Exemplar sequence
Representative Public ID F28H6.7 NCBI
Target Description F28H6.7 /REP_DB=WormBase Gene ID /WP=CE18652 /TR=Q9XX96 /GB=CAA20931.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077951(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077951 NCBI Caenorhabditis elegans F28H6.7 (F28H6.7) mRNA, complete cds. 11/11 None
SNAP00000032396 ENSEMBL cdna:SNAP chromosome:CEL140:X:14116031:14116671:1 11/11 None
GENEFINDER00000032404 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14116031:14116671:1 11/11 None
F28H6.7 ENSEMBL cdna:known chromosome:CEL140:X:14116031:14116671:1 gene:F28H6.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14116030-14116671(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28H6.7
Entrez Gene 185087 Entrez gene
SwissProt Q9XX96 EMBL-EBI
WormBase CE18652 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20931 Hypothetical protein F28H6.7 [Caenorhabditis elegans] ref|NP_510352.1| F28H6.7 [Caenorhabditis elegans] 1.0E-40
Sequence
Target Sequence 
>C. ELEGANS:179340_AT
atggtgaacccgtcgagctatgaaccaatcgtcggagaagtttatactgcccaaccggac
attaatgattcagcgttccaagcgtttggacaacgcgagcgtcaaagatcggagattcca
tacttttggtgtattccatgctgtcttatcattgacttctgtgcatgttttgtcgaagtg
tgcggtgcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTGAACCCGTCGAGCTATGAAC 403 45 13 Antisense
GAGCTATGAACCAATCGTCGGAGAA 129 389 27 Antisense
GGAGAAGTTTATACTGCCCAACCGG 589 513 46 Antisense
ACTGCCCAACCGGACATTAATGATT 31 99 58 Antisense
ATGATTCAGCGTTCCAAGCGTTTGG 497 45 77 Antisense
ACAACGCGAGCGTCAAAGATCGGAG 346 111 102 Antisense
AAGATCGGAGATTCCATACTTTTGG 422 151 117 Antisense
ATACTTTTGGTGTATTCCATGCTGT 82 25 132 Antisense
CATGCTGTCTTATCATTGACTTCTG 146 211 149 Antisense
TGACTTCTGTGCATGTTTTGTCGAA 378 571 165 Antisense
GTTTTGTCGAAGTGTGCGGTGCAGT 105 447 179 Antisense
Sequence Source Affymetrix Proprietary Database