[Home] | [Total List]

[179339_s_at]

Description B0491.4 /REP_DB=WormBase Gene ID /WP=CE02106 /TR=Q17511 /GB=CAA90086.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 27      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_total > 17      4grp_total > 31      6grp_high1_sub > Cu      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 247
1 2 3 4 range
A 322.8
(3)
P 		121.9
(-2.8)
P 		113.9
(-3)
P 		216.7
(-0)
P 		209
B 328.9
(3)
P 		121.9
(-2.6)
P 		106.1
(-3)
P 		203.2
(-0.4)
P 		223
C 352.7
(3)
P 		118
(-3)
P 		123
(-2.9)
P 		239.2
(0.1)
P 		235
avr 334.8
(3) 		120.6
(-2.8) 		114.3
(-3) 		219.7
(-0.1) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 226.1
(3)
P 		153.7
(-0.1)
P 		110
(-2)
P 		88
(-2.9)
P 		86.7
(-3)
P 		109.4
(-2)
P 		139
B 241.8
(3)
P 		153.5
(-0.5)
P 		94.9
(-2.9)
P 		100.3
(-2.7)
P 		105.7
(-2.4)
P 		91.7
(-3)
P 		150
C 201
(3)
P 		158.8
(0.4)
P 		104.1
(-3)
P 		126.5
(-1.6)
A 		119.4
(-2.1)
P 		155.1
(0.2)
P 		97
avr 223
(3) 		155.3
(-0.4) 		103
(-3) 		104.9
(-2.9) 		103.9
(-3) 		118.7
(-2.2) 		120
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 117.5
(3)
P 		26.5
(-3)
P 		29.8
(-2.8)
P 		31.7
(-2.7)
P 		91
B 104.9
(3)
P 		30.1
(-2.6)
P 		24.6
(-3)
P 		43.3
(-1.6)
P 		80
C 116.7
(3)
P 		33.9
(-3)
P 		42.9
(-2.3)
P 		40.3
(-2.5)
P 		83
avr 113
(3) 		30.2
(-3) 		32.4
(-2.8) 		38.4
(-2.4) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 41.7
(0.6)
P 		54.7
(3)
P 		24
(-2.7)
P 		22.3
(-3)
P 		26.2
(-2.3)
P 		26.6
(-2.2)
P 		32
B 84.1
(3)
P 		51.1
(-0.2)
P 		23.1
(-3)
P 		26.6
(-2.7)
P 		42.9
(-1.1)
P 		34.2
(-1.9)
P 		61
C 74.5
(3)
P 		48.4
(-0.2)
P 		26.5
(-2.9)
P 		25.4
(-3)
A 		38.6
(-1.4)
P 		51.9
(0.2)
P 		49
avr 66.8
(3) 		51.4
(0.8) 		24.5
(-3) 		24.8
(-3) 		35.9
(-1.4) 		37.6
(-1.1) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179339_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3568
Sequence Type Exemplar sequence
Representative Public ID B0491.4 NCBI
Target Description B0491.4 /REP_DB=WormBase Gene ID /WP=CE02106 /TR=Q17511 /GB=CAA90086.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064022(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064022 NCBI Caenorhabditis elegans B0491.4 (B0491.4) mRNA, complete cds. 11/11 None
GENEFINDER00000040227 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11340197:11343436:-1 11/11 None
B0491.4 ENSEMBL cdna:known chromosome:CEL140:II:11340040:11343436:-1 gene:B0491.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040218 2/11 Cross Hyb Matching Probes None
SNAP00000040219 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11340193-11343433(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0491.4
Entrez Gene 174733 Entrez gene
SwissProt Q17511 EMBL-EBI
WormBase CE02106 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90086 Hypothetical protein B0491.4 [Caenorhabditis elegans] ref|NP_496423.1| B0491.4 [Caenorhabditis elegans] 0.0
blast CAE59527 Hypothetical protein CBG02922 [Caenorhabditis briggsae] 0.0
blast AAL77194 Hypothetical protein Y74E4A.1b [Caenorhabditis elegans] ref|NP_740977.1| Y74E4A.1b [Caenorhabditis elegans] 9.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR006202 EMBL-EBI Neurotransmitter-gated ion-channel ligand binding domain 0.096
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496423.1 4 270-292,299-321,331-353,429-451
B0491.4 4 270-292,299-321,331-353,429-451
GENEFINDER00000040227 4 270-292,299-321,331-353,429-451
Sequence
Target Sequence 
>C. ELEGANS:179339_S_AT
agcagatgagcactgtccgtgttgctcttttattcccggttacgctggcgacatatgtga
tgctggcctcacctctcttcggagatcttcgcacacaaatctatgtgaagctcttctccc
tccatattcaaacattatgctttctctacctttgcaccataactccattgaacggttttc
ttggagtcagaccacgaatttacattttctacgaactgatctttacaatcagctttatga
gcattctggtaacgcttgtagttatggctctcagtcgtgtcaaacgaaacgtcccaccat
ctcatcggctattcctttcagcgaaattgataaaccgagttgtatgctgtattgagccgg
aaagaagtgatgcttatcatcgctacgtggaagaggacactccggaaagccgaactacaa
gcgaggttagtcagcagcagtcggtgataagacctggcgccgagctcgactacactcagg
attggcggcacatctatttggctatgaacaacatgttctcggctttgatgttctccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGATGAGCACTGTCCGTGTTGC 24 79 806 Antisense
TATTCCCGGTTACGCTGGCGACATA 625 661 836 Antisense
GACATATGTGATGCTGGCCTCACCT 686 365 855 Antisense
TCTCTTCGGAGATCTTCGCACACAA 396 613 879 Antisense
AACATTATGCTTTCTCTACCTTTGC 91 139 936 Antisense
ACCTTTGCACCATAACTCCATTGAA 265 87 953 Antisense
TGTAGTTATGGCTCTCAGTCGTGTC 683 559 1062 Antisense
TCATCGGCTATTCCTTTCAGCGAAA 367 619 1107 Antisense
CTCGACTACACTCAGGATTGGCGGC 440 233 1270 Antisense
GATTGGCGGCACATCTATTTGGCTA 681 435 1285 Antisense
TGTTCTCGGCTTTGATGTTCTCCGT 263 563 1319 Antisense
Sequence Source Affymetrix Proprietary Database