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[179337_at]

Description F26H9.1 /REP_DB=WormBase Gene ID /WP=CE09706 /TR=O01321 /GB=CAA99829.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 63      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 19
(-1)
A 		6.8
(-3)
A 		36.7
(1.8)
A 		44.1
(3)
A 		37
B 42.6
(3)
A 		6.8
(-3)
A 		36.5
(2)
A 		23.8
(-0.2)
A 		36
C 22.8
(0.6)
A 		26.8
(1.4)
A 		35.3
(3)
A 		3.5
(-3)
A 		32
avr 28.1
(0.9) 		13.5
(-3) 		36.2
(3) 		23.8
(-0.3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 4.2
(-3)
A 		30.7
(-2.2)
A 		27.5
(-2.3)
A 		42
(-1.9)
A 		128.1
(0.5)
P 		215.7
(3)
P 		212
B 6.4
(-3)
A 		35.4
(-2.1)
A 		15.3
(-2.7)
A 		93.1
(-0.4)
A 		153.7
(1.5)
P 		204.5
(3)
P 		198
C 12.8
(-2.8)
A 		3.7
(-3)
A 		43.1
(-2.1)
A 		28.9
(-2.4)
A 		172
(0.9)
P 		260.3
(3)
P 		257
avr 7.8
(-3) 		23.3
(-2.6) 		28.6
(-2.4) 		54.7
(-1.7) 		151.3
(0.9) 		226.8
(3) 		219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.9
(1)
A 		1.5
(-3)
A 		9.6
(3)
A 		6.5
(0.7)
A 		8
B 13.6
(3)
A 		1.7
(-3)
A 		8.5
(0.4)
A 		5.1
(-1.3)
A 		12
C 7.6
(0.6)
A 		7.7
(0.6)
A 		12.3
(3)
A 		0.6
(-3)
A 		12
avr 9.4
(2.4) 		3.6
(-3) 		10.1
(3) 		4.1
(-2.5) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 0.8
(-3)
A 		10.9
(-1.8)
A 		6
(-2.4)
A 		10.7
(-1.9)
A 		38.6
(1.4)
P 		52.5
(3)
P 		52
B 2.2
(-3)
A 		11.8
(-2.2)
A 		3.7
(-2.9)
A 		24.7
(-1.2)
A 		62.4
(1.9)
P 		76.3
(3)
P 		74
C 4.7
(-2.7)
A 		1.1
(-3)
A 		11
(-2.3)
A 		5.8
(-2.7)
A 		55.7
(0.8)
P 		87.2
(3)
P 		86
avr 2.6
(-3) 		7.9
(-2.5) 		6.9
(-2.6) 		13.7
(-2) 		52.2
(1.3) 		72
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179337_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.526
Sequence Type Exemplar sequence
Representative Public ID F26H9.1 NCBI
Target Description F26H9.1 /REP_DB=WormBase Gene ID /WP=CE09706 /TR=O01321 /GB=CAA99829.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060076(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060076 NCBI Caenorhabditis elegans F26H9.1 (F26H9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000021659 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9295745:9297524:1 11/11 None
F26H9.1 ENSEMBL cdna:known chromosome:CEL140:I:9295570:9297524:1 gene:F26H9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021649 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9295500-9297455(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26H9.1
Entrez Gene 185001 Entrez gene
SwissProt O01321 EMBL-EBI
WormBase CE09706 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99829 Hypothetical protein F26H9.1 [Caenorhabditis elegans] emb|CAB04206.1| Hypothetical protein F26H9.1 [Caenorhabditis elegans] ref|NP_492477.1| F26H9.1 [Caenorhabditis elegans] 0.0
blast CAE72325 Hypothetical protein CBG19470 [Caenorhabditis briggsae] 1.0E-157
blast CAE72325 Hypothetical protein CBG19470 [Caenorhabditis briggsae] 1.0E-156
Sequence
Target Sequence 
>C. ELEGANS:179337_AT
gcataatgcacttccgactgcacttttctaccttctgttttctccgaccacaatccaaga
tgatgaagaagtgattcactggcatcgattgtctttgttatccgtggtaacttccgaaga
agctgaagagttaaaaccgttatcaagagcaatgtgtgctctgatacagtgcagaaactt
aaaacacgtgttgccttggtcaaagaatacaattttcaatttgatggaagaaattacgac
atatccaaatccatggtcgatgagcacatttgttgcacttaacgtcctggaaccggagct
tgttcccattggtgttgttgcacgaatgaatcgtaatcacgaagatgaagcgggtgatat
aatttgcactatgaagatgcttctacatcgatgggatatggatgtctatggagtaatgga
atctataattgatacgataaaagcagtgctcaaaccataccaacgtcgtattctttttga
tcgttgttgggattggcatcaacgaaacattgacgagcatcgaaatcaaatgggacactt
ttccgacatacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATAATGCACTTCCGACTGCACTT 85 309 981 Antisense
TTTCTCCGACCACAATCCAAGATGA 374 667 1019 Antisense
ATTCACTGGCATCGATTGTCTTTGT 40 13 1054 Antisense
TTATCCGTGGTAACTTCCGAAGAAG 661 679 1078 Antisense
AAAACACGTGTTGCCTTGGTCAAAG 239 129 1161 Antisense
CACATTTGTTGCACTTAACGTCCTG 433 195 1245 Antisense
TAACGTCCTGGAACCGGAGCTTGTT 186 637 1260 Antisense
GAGCTTGTTCCCATTGGTGTTGTTG 171 385 1276 Antisense
AAAGCAGTGCTCAAACCATACCAAC 282 123 1420 Antisense
ACCAACGTCGTATTCTTTTTGATCG 85 83 1439 Antisense
AATGGGACACTTTTCCGACATACGC 511 163 1509 Antisense
Sequence Source Affymetrix Proprietary Database