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[179336_at]

Description T28C6.1 /REP_DB=WormBase Gene ID /WP=CE03746 /TR=Q22843 /GB=CAA90992.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 07      6grp_cgc > 27      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 106
(2.1)
P 		6.3
(-3)
A 		123.5
(3)
M 		84.1
(1)
A 		117
B 132.5
(3)
P 		73
(-3)
A 		96.2
(-0.7)
M 		124.7
(2.2)
P 		60
C 102.3
(1.1)
P 		110.7
(3)
M 		83.8
(-3)
P 		110.2
(2.9)
P 		27
avr 113.6
(3) 		63.3
(-3) 		101.2
(1.5) 		106.3
(2.1) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 160.3
(2.2)
P 		103.5
(-0.5)
P 		50.1
(-3)
P 		70.4
(-2)
A 		72.2
(-2)
P 		177.3
(3)
P 		127
B 80.1
(-0.7)
P 		85.3
(-0.4)
P 		68.8
(-1.4)
P 		55.4
(-2.2)
M 		41.6
(-3)
P 		140.7
(3)
P 		99
C 112.9
(1.3)
M 		77.9
(-0.8)
P 		65
(-1.6)
P 		75.7
(-0.9)
A 		41.9
(-3)
A 		140.2
(3)
P 		98
avr 117.8
(0.9) 		88.9
(-0.8) 		61.3
(-2.4) 		67.2
(-2.1) 		51.9
(-3) 		152.7
(3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 38.6
(3)
P 		1.4
(-3)
A 		32.3
(2)
M 		12.3
(-1.2)
A 		37
B 42.3
(3)
P 		18
(-3)
A 		22.3
(-1.9)
M 		26.6
(-0.9)
P 		24
C 33.8
(3)
P 		31.8
(2.2)
M 		29.2
(1.2)
P 		18.6
(-3)
P 		15
avr 38.2
(3) 		17.1
(-3) 		27.9
(0.1) 		19.2
(-2.4) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 29.6
(0.5)
P 		36.8
(1.8)
P 		10.9
(-3)
P 		17.8
(-1.7)
A 		21.8
(-1)
P 		43.2
(3)
P 		32
B 27.9
(-0.9)
P 		28.4
(-0.8)
P 		16.7
(-2.7)
P 		14.7
(-3)
M 		16.9
(-2.7)
P 		52.5
(3)
P 		38
C 41.8
(2.1)
M 		23.8
(-1.2)
P 		16.5
(-2.5)
P 		15.2
(-2.7)
A 		13.6
(-3)
A 		46.9
(3)
P 		33
avr 33.1
(0.4) 		29.7
(-0.3) 		14.7
(-3) 		15.9
(-2.8) 		17.4
(-2.5) 		47.5
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179336_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10063
Sequence Type Exemplar sequence
Representative Public ID T28C6.1 NCBI
Target Description T28C6.1 /REP_DB=WormBase Gene ID /WP=CE03746 /TR=Q22843 /GB=CAA90992.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069121(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069121 NCBI Caenorhabditis elegans T28C6.1 (T28C6.1) mRNA, complete cds. 11/11 None
SNAP00000005651 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8816330:8818355:1 11/11 None
GENEFINDER00000005666 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8816330:8818355:1 11/11 None
T28C6.1 ENSEMBL cdna:known chromosome:CEL140:IV:8816317:8818507:1 gene:T28C6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8816335-8817992(+) 63.88 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grsp-2
Ensembl T28C6.1
Entrez Gene 177693 Entrez gene
SwissProt Q22843 EMBL-EBI
WormBase CE35630 Wormbase
Sequence
Target Sequence 
>C. ELEGANS:179336_AT
cggaggtggtagcggtggtggacgaggaggatcaggaggcgcaggagctggaggatctgg
aagtggatcaggtggttggggaggccaagacggtggaagtagtgctggaggatggggagg
atcacaaggaggctcacaaggtggatcatccggtggatggggaggatcaagtagaagtga
ttctggatccggccaaggaggatggggtggacaacaaggaggcaactcaaacgccggtgg
atggggaggctctcaaggtggccaaaatggtggaggtggaagaggaggatccggtggtca
aggcggatggggaggaagccaagatggcggatctcaaggtggatggggaggacagaatgg
aggaggacaaggtggcaatcaaggaggtggtggtggacgaggaggaaatcaaggaggtga
acaaggtggatggggaggacaaggcggatcacaaggtggctcccaaggtggttcccaagg
tggatggggtaaccaaggaggtcaacaaggaggaggtcgcggtggacaacaaggtccagg
aggttggggaggcggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGAGGTGGTAGCGGTGGTGGACGA 534 241 249 Antisense
AGGAGGATCAGGAGGCGCAGGAGCT 322 57 273 Antisense
GAGGCTCACAAGGTGGATCATCCGG 615 403 377 Antisense
AGAAGTGATTCTGGATCCGGCCAAG 665 73 421 Antisense
GAGGCAACTCAAACGCCGGTGGATG 122 403 467 Antisense
GATGGGGAGGCTCTCAAGGTGGCCA 570 405 488 Antisense
GATGGCGGATCTCAAGGTGGATGGG 164 407 571 Antisense
CAAGGCGGATCACAAGGTGGCTCCC 112 183 688 Antisense
TCCCAAGGTGGTTCCCAAGGTGGAT 18 585 709 Antisense
GGAGGTCGCGGTGGACAACAAGGTC 337 515 760 Antisense
GGTCCAGGAGGTTGGGGAGGCGGCG 603 499 781 Antisense
Sequence Source Affymetrix Proprietary Database