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[179335_at]

Description K08E7.5 /REP_DB=WormBase Gene ID /WP=CE11924 /TR=Q21344 /GB=CAB01228.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1051
1 2 3 4 range
A 19.1
(-3)
A 		852.8
(3)
P 		805.3
(2.7)
P 		12.2
(-3)
A 		841
B 11.6
(-3)
A 		957.8
(3)
P 		932.9
(2.8)
P 		7.8
(-3)
A 		950
C 28
(-2.9)
A 		1059.2
(3)
P 		941.6
(2.3)
P 		8.5
(-3)
A 		1051
avr 19.6
(-2.9) 		956.6
(3) 		893.3
(2.6) 		9.5
(-3) 		947

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 614
1 2 3 4 5 6 range
A 65.6
(-2.8)
A 		658.1
(3)
P 		247.6
(-1)
P 		241.8
(-1.1)
P 		206.9
(-1.4)
P 		44
(-3)
P 		614
B 93.7
(-2.9)
A 		469.9
(3)
P 		181.6
(-1.5)
P 		199.6
(-1.2)
P 		154.3
(-1.9)
P 		87.1
(-3)
P 		383
C 69.1
(-3)
M 		497.6
(3)
P 		342.6
(0.8)
P 		136.9
(-2)
P 		199.6
(-1.1)
P 		65.7
(-3)
M 		432
avr 76.1
(-2.9) 		541.9
(3) 		257.3
(-0.6) 		192.8
(-1.4) 		186.9
(-1.5) 		65.6
(-3) 		476
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 6.9
(-2.9)
A 		185.1
(2.3)
P 		210.5
(3)
P 		1.8
(-3)
A 		209
B 3.7
(-2.9)
A 		236.6
(3)
P 		216.2
(2.5)
P 		1.7
(-3)
A 		235
C 9.3
(-2.9)
A 		304.5
(2.6)
P 		328.2
(3)
P 		1.4
(-3)
A 		327
avr 6.6
(-2.9) 		242.1
(2.8) 		251.6
(3) 		1.6
(-3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 12.1
(-3)
A 		234
(3)
P 		53.9
(-1.8)
P 		61.3
(-1.6)
P 		62.4
(-1.6)
P 		10.7
(-3)
P 		223
B 32.6
(-3)
A 		156.4
(3)
P 		44.1
(-2.4)
P 		52.9
(-2)
P 		62.7
(-1.5)
P 		32.5
(-3)
P 		124
C 25.6
(-2.8)
M 		151.8
(3)
P 		87.2
(0)
P 		27.5
(-2.7)
P 		64.6
(-1)
P 		22
(-3)
M 		130
avr 23.4
(-2.9) 		180.7
(3) 		61.7
(-1.5) 		47.2
(-2) 		63.2
(-1.4) 		21.7
(-3) 		159
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179335_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8679
Sequence Type Exemplar sequence
Representative Public ID K08E7.5 NCBI
Target Description K08E7.5 /REP_DB=WormBase Gene ID /WP=CE11924 /TR=Q21344 /GB=CAB01228.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070008(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070008 NCBI Caenorhabditis elegans K08E7.5 (K08E7.5) mRNA, complete cds. 11/11 A 
SNAP00000042646 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12573351:12578718:1 11/11 None
GENEFINDER00000042653 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12573351:12578718:1 11/11 None
K08E7.5 ENSEMBL cdna:known chromosome:CEL140:IV:12573366:12578816:1 gene:K08E7.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12573479-12578724(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08E7.5
Entrez Gene 178211 Entrez gene
SwissProt Q21344 EMBL-EBI
WormBase CE11924 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01228 Hypothetical protein K08E7.5 [Caenorhabditis elegans] ref|NP_502409.1| K08E7.5 [Caenorhabditis elegans] 0.0
blast CAE67913 Hypothetical protein CBG13510 [Caenorhabditis briggsae] 7.0E-95
blast AAZ14281 proteophosphoglycan 5 [Leishmania major strain Friedlin] ref|XP_843163.1| proteophosphoglycan 5 [Leishmania major] 3.0E-24
blast AAZ14281 proteophosphoglycan 5 [Leishmania major strain Friedlin] ref|XP_843163.1| proteophosphoglycan 5 [Leishmania major] 3.0E-20
Sequence
Target Sequence 
>C. ELEGANS:179335_AT
taaacttccgactattccaatctgtggtagagcctgcccatcgtgtccatgtcgacggag
aatgcacaaatcacgtcgtctcaagcgtcactcaattaactcgaactgtcatcagtgctc
ttctgccggtgagccatggagatctgtgttgcatcaccgagagaaacgtgcagctccggg
atgcacttccggtttttcgacgatgagtcaaaattcgtgtggcacatgtggagcgtcaaa
tctcagatcgccacgtgtcaagcgtatgggatgtctgccgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAACTTCCGACTATTCCAATCTGT 590 639 3057 Antisense
CCAATCTGTGGTAGAGCCTGCCCAT 112 277 3073 Antisense
CCATCGTGTCCATGTCGACGGAGAA 485 269 3094 Antisense
AGAATGCACAAATCACGTCGTCTCA 587 73 3115 Antisense
TCGTCTCAAGCGTCACTCAATTAAC 329 605 3132 Antisense
CGAACTGTCATCAGTGCTCTTCTGC 503 253 3158 Antisense
GGAGATCTGTGTTGCATCACCGAGA 86 519 3194 Antisense
AACGTGCAGCTCCGGGATGCACTTC 579 143 3221 Antisense
TGCACTTCCGGTTTTTCGACGATGA 515 575 3238 Antisense
GGAGCGTCAAATCTCAGATCGCCAC 492 521 3286 Antisense
CAAGCGTATGGGATGTCTGCCGTGT 532 183 3315 Antisense
Sequence Source Affymetrix Proprietary Database