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[179333_at]

Description F02D8.2 /REP_DB=WormBase Gene ID /WP=CE09180 /TR=Q19120 /GB=CAB01646.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 80      6grp_total > 11      4grp_total > 49      6grp_cgc > 64      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 37.5
(-2.6)
A 		219.5
(3)
P 		209.9
(2.7)
P 		25.7
(-3)
A 		194
B 63.4
(-3)
A 		180.8
(3)
P 		140.9
(1)
P 		67.4
(-2.8)
A 		117
C 23.2
(-3)
A 		186.3
(3)
P 		143.3
(1.4)
P 		108.9
(0.2)
A 		163
avr 41.4
(-3) 		195.5
(3) 		164.7
(1.8) 		67.3
(-2) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 87.5
(-1.9)
A 		135.7
(0.8)
P 		120.2
(-0.1)
P 		129.3
(0.4)
P 		176.5
(3)
P 		67
(-3)
A 		110
B 79.8
(-1.5)
P 		187.8
(3)
P 		126.1
(0.4)
P 		80.9
(-1.5)
P 		124.3
(0.3)
P 		44.4
(-3)
A 		143
C 68.7
(-2.8)
P 		193.3
(3)
P 		109.2
(-0.9)
P 		153.3
(1.1)
P 		124.4
(-0.2)
P 		64.8
(-3)
P 		129
avr 78.7
(-1.9) 		172.3
(3) 		118.5
(0.2) 		121.2
(0.3) 		141.7
(1.4) 		58.7
(-3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 13.7
(-1.8)
A 		47.6
(2.1)
P 		54.9
(3)
P 		3.8
(-3)
A 		51
B 20.2
(-1.9)
A 		44.7
(3)
P 		32.7
(0.6)
P 		14.4
(-3)
A 		30
C 7.7
(-3)
A 		53.6
(3)
P 		49.9
(2.5)
P 		18.4
(-1.6)
A 		46
avr 13.9
(-2.7) 		48.6
(3) 		45.8
(2.5) 		12.2
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 16.1
(-3)
A 		48.3
(2.2)
P 		26.2
(-1.4)
P 		32.8
(-0.3)
P 		53.3
(3)
P 		16.3
(-3)
A 		37
B 27.8
(-1.5)
P 		62.5
(3)
P 		30.6
(-1.2)
P 		21.4
(-2.4)
P 		50.5
(1.4)
P 		16.5
(-3)
A 		46
C 25.5
(-2.4)
P 		59
(3)
P 		27.8
(-2)
P 		30.8
(-1.5)
P 		40.3
(-0)
P 		21.7
(-3)
P 		37
avr 23.1
(-2.2) 		56.6
(3) 		28.2
(-1.4) 		28.3
(-1.4) 		48
(1.7) 		18.2
(-3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179333_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13291
Sequence Type Exemplar sequence
Representative Public ID F02D8.2 NCBI
Target Description F02D8.2 /REP_DB=WormBase Gene ID /WP=CE09180 /TR=Q19120 /GB=CAB01646.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074281(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074281 NCBI Caenorhabditis elegans GRounDhog (hedgehog-like family) family member (grd-12) (grd-12) mRNA, complete cds. 11/11 None
SNAP00000004123 ENSEMBL cdna:SNAP chromosome:CEL140:V:14981094:14982570:1 11/11 None
GENEFINDER00000004126 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14981094:14989186:1 11/11 None
F02D8.2 ENSEMBL cdna:known chromosome:CEL140:V:14981094:14982570:1 gene:F02D8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14981093-14982570(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grd-12
Ensembl F02D8.2
Entrez Gene 184079 Entrez gene
SwissProt Q19120 EMBL-EBI
WormBase CE09180 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_506683 X-BoX promoter element regulated family member (xbx-1) [Caenorhabditis elegans] 1.0E-169
blast CAB01666 Hypothetical protein F02D8.4 [Caenorhabditis elegans] emb|CAB01647.2| Hypothetical protein F02D8.4 [Caenorhabditis elegans] 1.0E-161
blast CAB01645 Hypothetical protein F02D8.3 [Caenorhabditis elegans] 1.0E-157
blast CAB01646 Hypothetical protein F02D8.2 [Caenorhabditis elegans] ref|NP_506682.1| GRounDhog (hedgehog-like family) family member (grd-12) [Caenorhabditis elegans] 1.0E-123
blast CAE66346 Hypothetical protein CBG11598 [Caenorhabditis briggsae] 2.0E-74
blast CAE66347 Hypothetical protein CBG11599 [Caenorhabditis briggsae] 5.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 5.1E-23
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 1.8E-67
Sequence
Target Sequence 
>C. ELEGANS:179333_AT
caaactatgcggctccttcaaacgcctacccatttgctcctcaatactcaattccaatga
actcatatgctatgccaaaatacgcagttgctccccaatatgcaatggttccatatccaa
cccctccagcttacgttagacctccaccggtttatgtcacacctccacctgtatatataa
ccccaccaccaactacaactactacaattccaccaccaaaatgtttccaaaacactcagg
gatacaaatgttgcaatcgacagttggatcaatttttagaacagaaagttggagagatgt
tgaagccagaatggcagagatgtaatctgcaacgatttgcaacacagcttcagcacgaaa
cgcaacaaatgttcaatcattcaatggaagcaatcgttgccagtggagaagtacaaaatc
tttcaaattaccgcggagacctttattgcaaaaagcggagtcgagacggaaagattgttg
tgatatatggctcagcagttccatattctctagataccggagtgactcgtccaatgaacg
atgacgagttgagaactcaaatgtatccggctaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAACTATGCGGCTCCTTCAAACGC 404 189 245 Antisense
TTTGCTCCTCAATACTCAATTCCAA 200 669 277 Antisense
TGCCAAAATACGCAGTTGCTCCCCA 292 585 317 Antisense
TGCTCCCCAATATGCAATGGTTCCA 610 581 333 Antisense
ACACCTCCACCTGTATATATAACCC 453 109 403 Antisense
GCAACGATTTGCAACACAGCTTCAG 648 319 573 Antisense
ACACAGCTTCAGCACGAAACGCAAC 345 111 586 Antisense
ATTACCGCGGAGACCTTTATTGCAA 663 11 671 Antisense
GCTCAGCAGTTCCATATTCTCTAGA 283 301 734 Antisense
GATACCGGAGTGACTCGTCCAATGA 27 425 757 Antisense
GAGAACTCAAATGTATCCGGCTAAG 181 391 795 Antisense
Sequence Source Affymetrix Proprietary Database