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[179332_at]

Description F28H6.6 /REP_DB=WormBase Gene ID /WP=CE18651 /TR=Q9XX94 /GB=CAA20935.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 61      4grp_high_8_8 > 09      6grp_total > 60      4grp_total > 14      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 116.2
(1.3)
P 		56.7
(-3)
A 		60.3
(-2.7)
A 		140.4
(3)
A 		84
B 103.4
(3)
P 		93
(-2)
P 		98.7
(0.7)
P 		91
(-3)
P 		12
C 95.5
(-0.1)
P 		84.7
(-1.9)
P 		78
(-3)
P 		114.8
(3)
P 		37
avr 105
(1.3) 		78.1
(-3) 		79
(-2.9) 		115.4
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 127.3
(2.6)
M 		102.9
(-0.2)
P 		114.1
(1.1)
P 		130.7
(3)
P 		78.2
(-3)
P 		103
(-0.2)
P 		53
B 87.2
(0.1)
P 		102.9
(2.4)
P 		66.6
(-3)
A 		103.9
(2.6)
P 		106.6
(3)
P 		102
(2.3)
P 		40
C 108
(-2.1)
P 		143.6
(0.9)
P 		156.7
(2.1)
P 		167.7
(3)
P 		98.1
(-3)
P 		100.7
(-2.8)
P 		70
avr 107.5
(-1) 		116.5
(0.3) 		112.5
(-0.3) 		134.1
(3) 		94.3
(-3) 		101.9
(-1.9) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 42.3
(3)
P 		12.3
(-3)
A 		15.8
(-2.3)
A 		20.5
(-1.4)
A 		30
B 33
(3)
P 		23
(-1.4)
P 		22.9
(-1.5)
P 		19.4
(-3)
P 		14
C 31.6
(3)
P 		24.4
(-0.5)
P 		27.2
(0.8)
P 		19.4
(-3)
P 		12
avr 35.6
(3) 		19.9
(-3) 		22
(-2.2) 		19.8
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 23.5
(-3)
M 		36.6
(3)
P 		24.8
(-2.4)
P 		33.2
(1.4)
P 		23.6
(-3)
P 		25.1
(-2.3)
P 		13
B 30.3
(0.1)
P 		34.2
(1)
P 		16.2
(-3)
A 		27.5
(-0.5)
P 		43.3
(3)
P 		38
(1.8)
P 		27
C 40
(1.1)
P 		43.8
(3)
P 		39.9
(1.1)
P 		33.7
(-2.1)
P 		31.8
(-3)
P 		33.7
(-2.1)
P 		12
avr 31.3
(-0.7) 		38.2
(3) 		27
(-3) 		31.5
(-0.6) 		32.9
(0.2) 		32.3
(-0.2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179332_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17842
Sequence Type Exemplar sequence
Representative Public ID F28H6.6 NCBI
Target Description F28H6.6 /REP_DB=WormBase Gene ID /WP=CE18651 /TR=Q9XX94 /GB=CAA20935.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077952(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077952 NCBI Caenorhabditis elegans F28H6.6 (F28H6.6) mRNA, complete cds. 11/11 None
SNAP00000032397 ENSEMBL cdna:SNAP chromosome:CEL140:X:14117506:14122194:-1 11/11 None
GENEFINDER00000032410 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14117506:14122194:-1 10/11 None
F28H6.6 ENSEMBL cdna:known chromosome:CEL140:X:14117008:14125794:-1 gene:F28H6.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14117505-14125794(-) 98.25 100.0
Public Domain and Genome References
Gene Title
Ensembl F28H6.6
Entrez Gene 181521 Entrez gene
SwissProt Q9XX94 EMBL-EBI
WormBase CE37365 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20935 Hypothetical protein F28H6.6 [Caenorhabditis elegans] ref|NP_510353.2| F28H6.6 [Caenorhabditis elegans] 0.0
blast CAA20935 Hypothetical protein F28H6.6 [Caenorhabditis elegans] ref|NP_510353.2| F28H6.6 [Caenorhabditis elegans] 1.0E-148
blast CAA20935 Hypothetical protein F28H6.6 [Caenorhabditis elegans] ref|NP_510353.2| F28H6.6 [Caenorhabditis elegans] 1.0E-141
blast AAC68722 Hypothetical protein T10D4.6 [Caenorhabditis elegans] ref|NP_494452.2| T10D4.6 [Caenorhabditis elegans] 4.0E-10
blast AAC68722 Hypothetical protein T10D4.6 [Caenorhabditis elegans] ref|NP_494452.2| T10D4.6 [Caenorhabditis elegans] 2.0E-9
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.20000004768372
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.3E-4
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.7E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.6E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.0E-4
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.2E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.3E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 7.6E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.5E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.5E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 2.9E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.0E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 7.8E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.5E-7
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 0.0012
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 8.8E-7
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 6.4E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.0E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.1E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 6.7E-7
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 8.6E-7
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.2E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 4.1E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.3E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 3.6E-8
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.8E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.3E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000032397 3 21-43,53-75,148-170
GENEFINDER00000032410 3 21-43,53-75,148-170
Sequence
Target Sequence 
>C. ELEGANS:179332_AT
aaaaggccgactccatgagctacatacttaccgcagaaaaagattatgcgatttgcttat
tctagagggcgcagcaaaaaagaatggtacacttaatttatcaaccgccgcggactctgc
aactagtcacgatcgttcattggacagaactcgagaactcgttgttcccccgtgccgtcg
tcgtttggaccagctgaagcccttgcgccttcatcgagcgaacatggaactttatgatca
ggattctggagagtgttttccttctgatggggatactcctgcacattcaagttccgacaa
gctgactccacgtccgcctcgtatatatagatatccagcctcatcaacagtttacctgcc
ggatggcgccacatgcgattgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGGCCGACTCCATGAGCTACAT 150 131 1572 Antisense
GTACACTTAATTTATCAACCGCCGC 647 457 1658 Antisense
ACTCTGCAACTAGTCACGATCGTTC 37 101 1685 Antisense
GTCGTCGTTTGGACCAGCTGAAGCC 262 473 1748 Antisense
TGGAGAGTGTTTTCCTTCTGATGGG 572 547 1818 Antisense
GGATACTCCTGCACATTCAAGTTCC 245 511 1842 Antisense
TTCAAGTTCCGACAAGCTGACTCCA 74 685 1857 Antisense
CCACGTCCGCCTCGTATATATAGAT 706 273 1879 Antisense
AGATATCCAGCCTCATCAACAGTTT 208 65 1900 Antisense
TCAACAGTTTACCTGCCGGATGGCG 565 627 1915 Antisense
CCGGATGGCGCCACATGCGATTGGA 39 265 1930 Antisense
Sequence Source Affymetrix Proprietary Database