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[179331_at]

Description F11C1.1 /REP_DB=WormBase Gene ID /WP=CE03186 /TR=Q19342 /GB=CAA91025.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 02      4grp_high_8_8 > 53      6grp_total > 23      4grp_total > 58      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 104.1
(-1.2)
P 		204.7
(3)
P 		140.4
(0.3)
P 		62.3
(-3)
P 		142
B 108.5
(-2)
P 		98.7
(-3)
P 		159.4
(3)
P 		103.8
(-2.5)
P 		61
C 119.3
(0.1)
P 		151
(1.9)
P 		169.8
(3)
P 		64.6
(-3)
A 		105
avr 110.6
(-0.5) 		151.5
(2.6) 		156.5
(3) 		76.9
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 145.8
(1)
A 		132.8
(0.2)
P 		179
(3)
P 		105.6
(-1.5)
P 		81.4
(-3)
P 		81.4
(-3)
P 		98
B 145.2
(2.2)
P 		148.9
(2.4)
P 		159.1
(3)
P 		123
(1)
P 		64
(-2.4)
P 		53.1
(-3)
P 		106
C 224
(3)
P 		167.3
(0.4)
P 		101.6
(-2.7)
P 		135.8
(-1.1)
P 		94.5
(-3)
P 		111.4
(-2.2)
P 		130
avr 171.7
(3) 		149.7
(1.6) 		146.6
(1.4) 		121.5
(-0.3) 		80
(-3) 		82
(-2.9) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 37.9
(1.9)
P 		44.4
(3)
P 		36.7
(1.7)
P 		9.1
(-3)
P 		35
B 34.6
(2.1)
P 		24.4
(-2.1)
P 		36.9
(3)
P 		22.1
(-3)
P 		15
C 39.5
(0.6)
P 		43.4
(1)
P 		59.2
(3)
P 		10.9
(-3)
A 		48
avr 37.3
(1.6) 		37.4
(1.6) 		44.3
(3) 		14
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 26.9
(-1.4)
A 		47.2
(3)
P 		39
(1.2)
P 		26.8
(-1.5)
P 		24.6
(-1.9)
P 		19.8
(-3)
P 		27
B 50.5
(3)
P 		49.6
(2.8)
P 		38.6
(0.7)
P 		32.6
(-0.5)
P 		26
(-1.8)
P 		19.8
(-3)
P 		31
C 83
(3)
P 		51.1
(-0.4)
P 		25.9
(-3)
P 		27.3
(-2.9)
P 		30.6
(-2.5)
P 		37.3
(-1.8)
P 		57
avr 53.5
(3) 		49.3
(2.1) 		34.5
(-1.1) 		28.9
(-2.3) 		27.1
(-2.7) 		25.6
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179331_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17716
Sequence Type Exemplar sequence
Representative Public ID F11C1.1 NCBI
Target Description F11C1.1 /REP_DB=WormBase Gene ID /WP=CE03186 /TR=Q19342 /GB=CAA91025.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077758(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077758 NCBI Caenorhabditis elegans F11C1.1 (F11C1.1) mRNA, complete cds. 11/11 None
GENEFINDER00000035047 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12985989:12989127:-1 10/11 None
F11C1.1 ENSEMBL cdna:known chromosome:CEL140:X:12987277:12989139:-1 gene:F11C1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035041 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12987482-12989127(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11C1.1
Entrez Gene 184341 Entrez gene
SwissProt Q19342 EMBL-EBI
WormBase CE03186 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91026 Hypothetical protein F11C1.2 [Caenorhabditis elegans] ref|NP_510158.2| F11C1.2 [Caenorhabditis elegans] 6.0E-82
blast CAA91025 Hypothetical protein F11C1.1 [Caenorhabditis elegans] ref|NP_510159.1| F11C1.1 [Caenorhabditis elegans] 3.0E-62
blast CAA91025 Hypothetical protein F11C1.1 [Caenorhabditis elegans] ref|NP_510159.1| F11C1.1 [Caenorhabditis elegans] 8.0E-55
blast CAE70360 Hypothetical protein CBG16918 [Caenorhabditis briggsae] 3.0E-43
blast CAE70360 Hypothetical protein CBG16918 [Caenorhabditis briggsae] 2.0E-42
blast AAA28020 Hypothetical protein F42H10.2 [Caenorhabditis elegans] ref|NP_498876.1| F42H10.2 [Caenorhabditis elegans] sp|P34415|YLZ2_CAEEL Hypothetical protein F42H10.2 in chromosome III 7.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR010625 EMBL-EBI CHCH 2.3E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000035047 1 251-268
Sequence
Target Sequence 
>C. ELEGANS:179331_AT
gacagaatcgatcaactccaaaaattccaatgataagcaatatgtaatgggaaaagagga
attttgggatgatatcaaagattcgtattttcaaaagttagcaaacaccaacccgaatga
tgtttatccagataataatccaggaccagaaaaccccgatggaacagttaactttgaatg
tcactgtgttggacatttggtggcaagcccatgtggctacgagttcagagaagcaatttc
atgtcagaaaacgtcaagtgatgaggaaatggaaaatggggcgtgcggtgaacaattgat
ggcgtttatggagtgcgcgatgaggactcaatgtttcaagaccaacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGAATCGATCAACTCCAAAAAT 376 365 15 Antisense
AAGTTAGCAAACACCAACCCGAATG 114 155 109 Antisense
ACCAACCCGAATGATGTTTATCCAG 575 83 121 Antisense
AATCCAGGACCAGAAAACCCCGATG 636 165 151 Antisense
GTCACTGTGTTGGACATTTGGTGGC 564 465 194 Antisense
ACATTTGGTGGCAAGCCCATGTGGC 600 105 207 Antisense
GCCCATGTGGCTACGAGTTCAGAGA 131 287 221 Antisense
GGGGCGTGCGGTGAACAATTGATGG 686 497 292 Antisense
GATGGCGTTTATGGAGTGCGCGATG 251 407 312 Antisense
GGAGTGCGCGATGAGGACTCAATGT 236 517 324 Antisense
GACTCAATGTTTCAAGACCAACGAC 227 371 339 Antisense
Sequence Source Affymetrix Proprietary Database