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[179330_at]

Description W06G6.1 /REP_DB=WormBase Gene ID /WP=CE20151 /TR=O18176 /GB=CAB16533.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 24.4
(-0.9)
A 		17.3
(-1.7)
A 		5.9
(-3)
A 		57.9
(3)
A 		52
B 25.6
(-3)
A 		32.6
(-0.9)
A 		45.4
(3)
M 		28
(-2.3)
A 		20
C 26.2
(-0.2)
A 		24.2
(-0.4)
A 		1.8
(-3)
A 		54.5
(3)
A 		53
avr 25.4
(-1.4) 		24.7
(-1.6) 		17.7
(-3) 		46.8
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 4.6
(-2.7)
A 		12.7
(-1.6)
A 		46.8
(3)
P 		28.4
(0.5)
A 		28.7
(0.6)
A 		2
(-3)
A 		45
B 6.8
(-1.8)
A 		19.9
(3)
A 		8.4
(-1.2)
A 		7
(-1.7)
A 		3.5
(-3)
A 		16
(1.6)
A 		16
C 4.4
(-3)
A 		24.9
(1.6)
A 		5.6
(-2.7)
A 		31
(3)
A 		20.5
(0.6)
A 		17
(-0.2)
A 		27
avr 5.3
(-3) 		19.2
(2) 		20.3
(2.4) 		22.1
(3) 		17.6
(1.4) 		11.7
(-0.7) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 8.9
(3)
A 		3.8
(-1.1)
A 		1.5
(-3)
A 		8.5
(2.7)
A 		7
B 8.2
(-0.1)
A 		8
(-0.3)
A 		10.5
(3)
M 		6
(-3)
A 		5
C 8.7
(2.7)
A 		6.9
(1.4)
A 		0.6
(-3)
A 		9.2
(3)
A 		9
avr 8.6
(3) 		6.2
(-0.3) 		4.2
(-3) 		7.9
(2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.9
(-2.8)
A 		4.5
(-0.5)
A 		10.2
(3)
P 		7.2
(1.1)
A 		8.7
(2.1)
A 		0.5
(-3)
A 		10
B 2.4
(-1.8)
A 		6.6
(3)
A 		2
(-2.3)
A 		1.8
(-2.5)
A 		1.4
(-3)
A 		6
(2.3)
A 		5
C 1.6
(-2.8)
A 		7.6
(3)
A 		1.4
(-3)
A 		6.2
(1.6)
A 		6.6
(2)
A 		5.7
(1.2)
A 		6
avr 1.6
(-3) 		6.2
(3) 		4.5
(0.8) 		5.1
(1.6) 		5.6
(2.2) 		4.1
(0.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179330_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14556
Sequence Type Exemplar sequence
Representative Public ID W06G6.1 NCBI
Target Description W06G6.1 /REP_DB=WormBase Gene ID /WP=CE20151 /TR=O18176 /GB=CAB16533.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074804(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074804 NCBI Caenorhabditis elegans W06G6.1 (W06G6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000020487 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16626590:16629231:-1 11/11 None
W06G6.1 ENSEMBL cdna:known chromosome:CEL140:V:16626590:16630067:-1 gene:W06G6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020486 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16626589-16630067(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06G6.1
Entrez Gene 189254 Entrez gene
SwissProt O18176 EMBL-EBI
WormBase CE20151 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16533 Hypothetical protein W06G6.1 [Caenorhabditis elegans] emb|CAB05645.1| Hypothetical protein W06G6.1 [Caenorhabditis elegans] ref|NP_507205.1| W06G6.1 [Caenorhabditis elegans] 0.0
blast CAE61206 Hypothetical protein CBG04996 [Caenorhabditis briggsae] 0.0
blast CAE58792 Hypothetical protein CBG01998 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 5.3E-5
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 3.2E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507205.1 9 120-142,233-255,285-307,351-373,386-405,415-437,458-480,495-514,527-549
W06G6.1 9 120-142,233-255,285-307,351-373,386-405,415-437,458-480,495-514,527-549
GENEFINDER00000020487 10 71-93,108-130,160-182,217-239,246-268,288-310,323-345,365-384,397-419,429-451
Sequence
Target Sequence 
>C. ELEGANS:179330_AT
aatccgatttaaccgagctatcagtattacttgctgggtcgtagcttttggaattggttt
cgcatgtttatttgctaattatgattatgataaaggatcatattggagtccgtttgtcaa
aggaacttttaataatttttcgaggctgggatggtcagttgcagtggcttgggtcattgt
tgctaatcattttgggtggggaggtccaattaatgcatttatgtctcacccgatttggca
accatttggaaaattatcatactgcgcatatattgtgcattggatggccctttattattt
cctgaacgtcggagatagacctctgcaattttttaatatttggcaagtgtactgctacta
cgcaatccccgctacaattctctcctactttttcgcatttttctggagctgccttttcga
agtctccaccttaaaacttgagaaaatgctcatcgaggctattttgagaattggagcaac
aacttctgactcgagaccaaaaccagttccaatttccggcggcttaacaaaggcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCGATTTAACCGAGCTATCAGT 361 167 1242 Antisense
TACTTGCTGGGTCGTAGCTTTTGGA 412 645 1269 Antisense
GAGGCTGGGATGGTCAGTTGCAGTG 631 405 1383 Antisense
AGTTGCAGTGGCTTGGGTCATTGTT 349 65 1398 Antisense
TTATGTCTCACCCGATTTGGCAACC 42 681 1460 Antisense
GATGGCCCTTTATTATTTCCTGAAC 83 407 1524 Antisense
GAACGTCGGAGATAGACCTCTGCAA 88 349 1545 Antisense
AAGTGTACTGCTACTACGCAATCCC 470 159 1586 Antisense
GAGCAACAACTTCTGACTCGAGACC 86 391 1715 Antisense
GACTCGAGACCAAAACCAGTTCCAA 344 373 1729 Antisense
ATTTCCGGCGGCTTAACAAAGGCAG 331 13 1753 Antisense
Sequence Source Affymetrix Proprietary Database