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[179329_at]

Description F09C6.6 /REP_DB=WormBase Gene ID /WP=CE15765 /TR=O45333 /GB=CAB04073.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 13.5
(-1.5)
A 		10.2
(-1.9)
A 		1.2
(-3)
A 		50.7
(3)
A 		50
B 12.3
(-0.2)
A 		6.7
(-1.9)
A 		2.9
(-3)
A 		23.1
(3)
A 		20
C 10.6
(3)
A 		7.5
(0.8)
A 		2.2
(-3)
A 		5
(-1)
A 		8
avr 12.1
(-0.5) 		8.1
(-1.5) 		2.1
(-3) 		26.3
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 4.6
(-1.4)
A 		1.5
(-2.8)
A 		4.3
(-1.5)
A 		14.2
(3)
A 		6.3
(-0.6)
A 		1.1
(-3)
A 		13
B 17.8
(1.6)
A 		11.4
(-0.2)
A 		22.9
(3)
A 		4.1
(-2.3)
A 		16.8
(1.3)
A 		1.6
(-3)
A 		21
C 24.8
(3)
A 		20.3
(1.9)
A 		7.4
(-1.4)
A 		14.1
(0.3)
A 		0.9
(-3)
A 		2.8
(-2.5)
A 		24
avr 15.7
(3) 		11.1
(1) 		11.5
(1.2) 		10.8
(0.9) 		8
(-0.3) 		1.8
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 4.9
(0.9)
A 		2.2
(-1.4)
A 		0.3
(-3)
A 		7.4
(3)
A 		7
B 3.9
(1.6)
A 		1.7
(-1.6)
A 		0.7
(-3)
A 		4.9
(3)
A 		4
C 3.5
(3)
A 		2.2
(0.1)
A 		0.8
(-3)
A 		0.8
(-3)
A 		3
avr 4.1
(2.5) 		2
(-0.8) 		0.6
(-3) 		4.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.9
(-1.9)
A 		0.5
(-2.6)
A 		0.9
(-1.9)
A 		3.6
(3)
A 		1.9
(-0.1)
A 		0.3
(-3)
A 		3
B 6.2
(2.4)
A 		3.8
(0.1)
A 		5.6
(1.8)
A 		1.1
(-2.5)
A 		6.8
(3)
A 		0.6
(-3)
A 		6
C 9.2
(3)
A 		6.2
(1)
A 		1.9
(-1.9)
A 		2.8
(-1.3)
A 		0.3
(-3)
A 		1
(-2.5)
A 		9
avr 5.4
(3) 		3.5
(0.6) 		2.8
(-0.3) 		2.5
(-0.6) 		3
(-0) 		0.6
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179329_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14542
Sequence Type Exemplar sequence
Representative Public ID F09C6.6 NCBI
Target Description F09C6.6 /REP_DB=WormBase Gene ID /WP=CE15765 /TR=O45333 /GB=CAB04073.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074869(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074869 NCBI Caenorhabditis elegans F09C6.6 (F09C6.6) mRNA, complete cds. 11/11 None
SNAP00000006348 ENSEMBL cdna:SNAP chromosome:CEL140:V:16900979:16902034:-1 10/11 None
GENEFINDER00000006364 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16900915:16902034:-1 11/11 None
F09C6.6 ENSEMBL cdna:known chromosome:CEL140:V:16901036:16902034:-1 gene:F09C6.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16901035-16902034(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09C6.6
Entrez Gene 184233 Entrez gene
SwissProt O45333 EMBL-EBI
WormBase CE15765 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04073 Hypothetical protein F09C6.6 [Caenorhabditis elegans] ref|NP_507270.1| F09C6.6 [Caenorhabditis elegans] 1.0E-175
blast CAB04073 Hypothetical protein F09C6.6 [Caenorhabditis elegans] ref|NP_507270.1| F09C6.6 [Caenorhabditis elegans] 1.0E-151
blast CAB04070 Hypothetical protein F09C6.2 [Caenorhabditis elegans] ref|NP_507267.2| F09C6.2 [Caenorhabditis elegans] 2.0E-76
blast CAB04070 Hypothetical protein F09C6.2 [Caenorhabditis elegans] ref|NP_507267.2| F09C6.2 [Caenorhabditis elegans] 7.0E-76
blast CAB04070 Hypothetical protein F09C6.2 [Caenorhabditis elegans] ref|NP_507267.2| F09C6.2 [Caenorhabditis elegans] 5.0E-72
blast AAC78152 Hypothetical protein F52D2.1 [Caenorhabditis elegans] ref|NP_508358.1| F52D2.1 [Caenorhabditis elegans] 3.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-48
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.2E-10
Sequence
Target Sequence 
>C. ELEGANS:179329_AT
gtgggaatagctctttgcgatttgagaatatttttgaagcacgcatccatgttaacaatc
tatgactatctcaaagatagacaggactttatcgaatcttttattgaaattttgaaatca
gacggaattattaaagtgaaggaaatcgtattttttcaagtctcattcaaggatgctatt
gcaattctcccatattttgatgcggaagttcttgacttgcagacgactggctcaattaac
caattcgagcagatgacccatctcagtctatggaaaaattgcaaaaccttcaagttttct
cgttatgttgacagtaaactattttcccatttgtttcatttcgaaaacttcaatatctcc
atgcttgattttaatacacaaatcgctatgaaaatgagagatgatcttatgagacgaagt
acattcaaaagttgccgtatagaatttgacaagtggaatctaattgaaattgcaaaagta
ttcaaaccggattatgctggtggcaatgtattcaaaattaaatattcaaacaatgactac
acctttacaattaaatgtaaaccctggcatggcatggcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGGAATAGCTCTTTGCGATTTGA 204 489 301 Antisense
GAAGCACGCATCCATGTTAACAATC 588 341 336 Antisense
GACAGGACTTTATCGAATCTTTTAT 629 365 380 Antisense
AAATCGTATTTTTTCAAGTCTCATT 450 117 443 Antisense
ATGCTATTGCAATTCTCCCATATTT 387 43 473 Antisense
AGTTCTTGACTTGCAGACGACTGGC 294 63 507 Antisense
AACCAATTCGAGCAGATGACCCATC 227 149 538 Antisense
AGATGACCCATCTCAGTCTATGGAA 12 67 551 Antisense
ACCTTCAAGTTTTCTCGTTATGTTG 389 87 586 Antisense
GAAAACTTCAATATCTCCATGCTTG 417 355 643 Antisense
TGTAAACCCTGGCATGGCATGGCAT 171 471 856 Antisense
Sequence Source Affymetrix Proprietary Database