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[179328_at]

Description C10C5.1 /REP_DB=WormBase Gene ID /WP=CE03009 /TR=Q17897 /GB=CAA92444.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 45      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 82.4
(3)
P 		79.3
(2.8)
A 		6.2
(-3)
A 		69.4
(2)
A 		76
B 76.5
(2.2)
P 		85.1
(3)
A 		22.1
(-3)
A 		31.1
(-2.1)
A 		63
C 97.2
(3)
P 		68.8
(0.4)
A 		54.9
(-0.9)
A 		32.2
(-3)
A 		65
avr 85.4
(3) 		77.7
(2.2) 		27.7
(-3) 		44.2
(-1.3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 56
(-1.2)
A 		147.7
(3)
P 		45.8
(-1.7)
A 		60.5
(-1)
A 		16.5
(-3)
A 		41.1
(-1.9)
A 		131
B 65
(1)
A 		57.2
(0.1)
A 		30
(-3)
A 		44
(-1.4)
A 		47.8
(-1)
A 		82.3
(3)
A 		52
C 73.6
(1.2)
A 		38.7
(-2.8)
A 		89
(3)
A 		77.5
(1.7)
A 		36.7
(-3)
A 		58.3
(-0.5)
A 		52
avr 64.9
(0.9) 		81.2
(3) 		54.9
(-0.3) 		60.7
(0.4) 		33.7
(-3) 		60.6
(0.4) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 30
(3)
P 		17.2
(0.3)
A 		1.6
(-3)
A 		10.2
(-1.2)
A 		28
B 24.4
(3)
P 		21
(1.9)
A 		5.1
(-3)
A 		6.6
(-2.5)
A 		19
C 32.2
(3)
P 		19.8
(0.2)
A 		19.1
(0.1)
A 		5.4
(-3)
A 		27
avr 28.9
(3) 		19.3
(0.3) 		8.6
(-2.7) 		7.4
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 10.3
(-2.3)
A 		52.5
(3)
P 		10
(-2.4)
A 		15.4
(-1.7)
A 		5
(-3)
A 		10
(-2.4)
A 		48
B 22.6
(0.9)
A 		19
(0)
A 		7.3
(-3)
A 		11.7
(-1.9)
A 		19.4
(0.1)
A 		30.7
(3)
A 		23
C 27.3
(3)
A 		11.8
(-3)
A 		22.6
(1.2)
A 		15.6
(-1.5)
A 		11.9
(-3)
A 		19.5
(-0)
A 		16
avr 20.1
(0.1) 		27.8
(3) 		13.3
(-2.5) 		14.2
(-2.2) 		12.1
(-3) 		20.1
(0.1) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179328_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10131
Sequence Type Exemplar sequence
Representative Public ID C10C5.1 NCBI
Target Description C10C5.1 /REP_DB=WormBase Gene ID /WP=CE03009 /TR=Q17897 /GB=CAA92444.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069247(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069247 NCBI Caenorhabditis elegans C10C5.1 (C10C5.1) mRNA, complete cds. 11/11 None
SNAP00000010262 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9359423:9362500:-1 11/11 None
GENEFINDER00000010273 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9359418:9366431:-1 11/11 None
C10C5.1 ENSEMBL cdna:known chromosome:CEL140:IV:9359418:9366431:-1 gene:C10C5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9359423-9366437(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10C5.1
Entrez Gene 182492 Entrez gene
SwissProt Q17897 EMBL-EBI
WormBase CE03009 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92444 Hypothetical protein C10C5.1 [Caenorhabditis elegans] ref|NP_501648.1| C10C5.1 [Caenorhabditis elegans] 0.0
blast CAE74038 Hypothetical protein CBG21689 [Caenorhabditis briggsae] 0.0
blast CAA92444 Hypothetical protein C10C5.1 [Caenorhabditis elegans] ref|NP_501648.1| C10C5.1 [Caenorhabditis elegans] 4.0E-85
blast CAE74038 Hypothetical protein CBG21689 [Caenorhabditis briggsae] 7.0E-71
blast XP_546782 PREDICTED: similar to Protein FAM38A [Canis familiaris] 1.0E-23
blast CAG07119 unnamed protein product [Tetraodon nigroviridis] 1.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501648.1 15 23-45,57-79,122-144,174-196,211-233,240-262,303-325,498-517,521-543,550-572,595-617,671-693,698-715,727-749,783-805
C10C5.1 15 23-45,57-79,122-144,174-196,211-233,240-262,303-325,498-517,521-543,550-572,595-617,671-693,698-715,727-749,783-805
SNAP00000010262 4 42-64,69-86,98-120,154-176
GENEFINDER00000010273 15 23-45,57-79,122-144,174-196,211-233,240-262,303-325,452-471,475-497,504-526,549-571,625-647,652-669,681-703,737-759
Sequence
Target Sequence 
>C. ELEGANS:179328_AT
gtcggaagttcgcggcatttgtggaatatctgtcgaataaagtgtctgtctacttcatat
ttgtagtatcagtggtacttttggtggtctctacgtgttttgctccgaatttctacaata
ttctattcttcgcactatgggcattgaacttgatttatctcaagttctcattccgtctgt
atcgtggattggcatatgcattctggctaactctcacgttctacacttcaattgttatta
tcgccctctacatttatcagttccctggagtatctcaatggattattcgaaatactagtt
tgtcgcaggagtggctgaatgcaattggacttgtcgattttagagctatcggtgaatcgg
gagccctatttctacaattactcgccccaattgccttgttcgtcgtcacaatgctccaac
tcaagtttttccatggaccatggagtcgagcaacgtcaccaagaagagcagaaaatgatc
cacctacaagtacgacggaggctgcggcggtagcaagcacatctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGGAAGTTCGCGGCATTTGTGGA 272 471 1997 Antisense
TACTTTTGGTGGTCTCTACGTGTTT 529 645 2072 Antisense
TACGTGTTTTGCTCCGAATTTCTAC 113 641 2088 Antisense
ATATTCTATTCTTCGCACTATGGGC 305 19 2114 Antisense
GTTCTCATTCCGTCTGTATCGTGGA 526 443 2160 Antisense
GCATATGCATTCTGGCTAACTCTCA 233 309 2188 Antisense
CTCTCACGTTCTACACTTCAATTGT 315 231 2207 Antisense
TTATCGCCCTCTACATTTATCAGTT 151 681 2234 Antisense
GAGCTATCGGTGAATCGGGAGCCCT 127 389 2339 Antisense
AGCCCTATTTCTACAATTACTCGCC 239 83 2358 Antisense
TGCGGCGGTAGCAAGCACATCTGGA 281 581 2499 Antisense
Sequence Source Affymetrix Proprietary Database