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[179327_at]

Description T04F8.3 /REP_DB=WormBase Gene ID /WP=CE03616 /TR=Q22163 /GB=CAA91479.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 05      6grp_total > 71      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 387
1 2 3 4 range
A 111.6
(-1.6)
A 		74.6
(-2.2)
A 		20.2
(-3)
A 		407.5
(3)
P 		387
B 230.4
(-0.3)
P 		162.5
(-2.8)
P 		155.7
(-3)
P 		320.3
(3)
P 		165
C 167.4
(-1.8)
P 		124.2
(-3)
A 		158.2
(-2.1)
P 		339
(3)
P 		215
avr 169.8
(-1.6) 		120.4
(-2.8) 		111.4
(-3) 		355.6
(3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 217
1 2 3 4 5 6 range
A 371.9
(3)
P 		217.7
(-1.4)
P 		289.5
(0.7)
P 		293.5
(0.8)
P 		279.1
(0.4)
P 		159.4
(-3)
A 		213
B 213.8
(-1.4)
P 		286.1
(0.7)
P 		246.7
(-0.4)
P 		369.2
(3)
P 		280.4
(0.5)
P 		155.2
(-3)
M 		214
C 163
(-3)
P 		300.6
(1)
P 		266.4
(0)
P 		369.7
(3)
P 		230.2
(-1)
P 		203.1
(-1.8)
M 		207
avr 249.6
(-0.3) 		268.1
(0.3) 		267.5
(0.3) 		344.1
(3) 		263.2
(0.2) 		172.6
(-3) 		172
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 40.6
(0.9)
A 		16.2
(-1.8)
A 		5.3
(-3)
A 		59.6
(3)
P 		54
B 73.5
(3)
P 		40.1
(-2.4)
P 		36.1
(-3)
P 		68.3
(2.2)
P 		37
C 55.4
(2.5)
P 		35.7
(-3)
A 		55.1
(2.4)
P 		57.2
(3)
P 		22
avr 56.5
(2) 		30.7
(-3) 		32.2
(-2.7) 		61.7
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 68.6
(0.9)
P 		77.4
(2.1)
P 		63
(0.2)
P 		74.4
(1.7)
P 		84.2
(3)
P 		38.8
(-3)
A 		45
B 74.4
(-1.2)
P 		95.2
(1)
P 		59.9
(-2.8)
P 		97.8
(1.3)
P 		113.9
(3)
P 		57.9
(-3)
M 		56
C 60.4
(-3)
P 		91.7
(3)
P 		67.8
(-1.6)
P 		74.3
(-0.3)
P 		74.5
(-0.3)
P 		68
(-1.5)
M 		31
avr 67.8
(-0.9) 		88.1
(2.5) 		63.6
(-1.6) 		82.2
(1.6) 		90.9
(3) 		54.9
(-3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179327_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16674
Sequence Type Exemplar sequence
Representative Public ID T04F8.3 NCBI
Target Description T04F8.3 /REP_DB=WormBase Gene ID /WP=CE03616 /TR=Q22163 /GB=CAA91479.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077547(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077547 NCBI Caenorhabditis elegans T04F8.3 (T04F8.3) mRNA, complete cds. 11/11 None
T04F8.3 ENSEMBL cdna:known chromosome:CEL140:X:11658362:11659614:1 gene:T04F8.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020400 5/11 Cross Hyb Matching Probes None
GENEFINDER00000020412 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11658361-11659614(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04F8.3
Entrez Gene 188065 Entrez gene
SwissProt Q22163 EMBL-EBI
WormBase CE03616 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91479 Hypothetical protein T04F8.3 [Caenorhabditis elegans] ref|NP_509948.1| T04F8.3 [Caenorhabditis elegans] 8.0E-86
blast CAE70600 Hypothetical protein CBG17274 [Caenorhabditis briggsae] 6.0E-31
Sequence
Target Sequence 
>C. ELEGANS:179327_AT
gctatggaactcacccgtcatgagcaacgacgtcgactgctgaaaatgcgagttcccatt
atctaccgtaagcctggggcctgctttccaattgtgaataataacatccgcgtctatgct
tatgaaattgaccatctagggaaagtcattcgtgcttcaatcatgacaatccattacaag
gcgccgctctgtgaacttcgcgacaagtacgcagccaagtacaacatctttccacatgag
attgatatgttctatgacgacaaagaagtatttgatgacgacacttgcagcgagattggc
atcgaacatgaacaaattattcggatgcacgttaccatcgacacgcttttcacaaagaac
cgagatgtaatgaaacttcttatcgacccctgctcaatcttagaataca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTATGGAACTCACCCGTCATGAGC 98 303 22 Antisense
TTCCCATTATCTACCGTAAGCCTGG 35 697 74 Antisense
GGGCCTGCTTTCCAATTGTGAATAA 455 491 98 Antisense
ATAACATCCGCGTCTATGCTTATGA 370 25 122 Antisense
GAAAGTCATTCGTGCTTCAATCATG 364 361 162 Antisense
TTACAAGGCGCCGCTCTGTGAACTT 435 681 195 Antisense
GAACTTCGCGACAAGTACGCAGCCA 208 351 214 Antisense
GCAGCCAAGTACAACATCTTTCCAC 320 313 232 Antisense
TTACCATCGACACGCTTTTCACAAA 647 681 353 Antisense
GTAATGAAACTTCTTATCGACCCCT 497 455 388 Antisense
GACCCCTGCTCAATCTTAGAATACA 617 381 406 Antisense
Sequence Source Affymetrix Proprietary Database