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[179326_at] 7TM chemoreceptor, srw family

Description F14F8.5 /REP_DB=WormBase Gene ID /WP=CE18589 /TR=Q9XU36 /GB=CAB07186.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 26      4grp_total > 12      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 31.4
(-3)
A 		31.2
(-3)
A 		37.5
(-2.3)
A 		83.5
(3)
A 		52
B 50.2
(3)
A 		29.2
(-1.8)
A 		24.1
(-3)
A 		35.1
(-0.5)
A 		26
C 23.5
(-1.3)
A 		37.7
(-0.2)
A 		2.9
(-3)
A 		77.2
(3)
A 		74
avr 35
(-1.2) 		32.7
(-1.5) 		21.5
(-3) 		65.3
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 55.7
(3)
A 		5.9
(-2.9)
A 		33.3
(0.3)
A 		5.5
(-2.9)
A 		5
(-3)
A 		5.9
(-2.9)
A 		51
B 38.3
(3)
A 		32
(1.9)
A 		3.7
(-2.9)
A 		2.9
(-3)
A 		4.4
(-2.7)
A 		24.1
(0.6)
A 		35
C 32.7
(-0.2)
A 		57.8
(3)
A 		10.9
(-3)
A 		15.1
(-2.5)
A 		17.2
(-2.2)
A 		29.4
(-0.6)
A 		47
avr 42.2
(3) 		31.9
(1.2) 		16
(-1.6) 		7.8
(-3) 		8.9
(-2.8) 		19.8
(-0.9) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 11.4
(2.1)
A 		6.8
(-3)
A 		9.8
(0.3)
A 		12.2
(3)
A 		5
B 16
(3)
A 		7.2
(-2.1)
A 		5.6
(-3)
A 		7.5
(-1.9)
A 		10
C 7.8
(0.4)
A 		10.8
(1.9)
A 		1
(-3)
A 		13
(3)
A 		12
avr 11.7
(3) 		8.3
(-0.3) 		5.5
(-3) 		10.9
(2.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.3
(3)
A 		2.1
(-2.5)
A 		7.3
(1)
A 		1.4
(-3)
A 		1.5
(-2.9)
A 		1.4
(-3)
A 		9
B 13.3
(3)
A 		10.6
(1.7)
A 		0.9
(-3)
A 		0.8
(-3)
A 		1.8
(-2.5)
A 		9
(0.9)
A 		13
C 12.1
(0.8)
A 		17.6
(3)
A 		2.8
(-3)
A 		3
(-2.9)
A 		5.6
(-1.9)
A 		9.9
(-0.1)
A 		15
avr 11.9
(3) 		10.1
(1.9) 		3.7
(-1.8) 		1.7
(-3) 		3
(-2.2) 		6.8
(-0) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179326_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12658
Sequence Type Exemplar sequence
Representative Public ID F14F8.5 NCBI
Target Description F14F8.5 /REP_DB=WormBase Gene ID /WP=CE18589 /TR=Q9XU36 /GB=CAB07186.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074824(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074824 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-43) (srw-43) mRNA, complete cds. 11/11 None
GENEFINDER00000022531 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16682863:16689665:1 11/11 None
F14F8.5 ENSEMBL cdna:known chromosome:CEL140:V:16687964:16689665:1 gene:F14F8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16687963-16689665(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-43
Ensembl F14F8.5
Entrez Gene 184479 Entrez gene
SwissProt Q9XU36 EMBL-EBI
WormBase CE18589 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07186 Hypothetical protein F14F8.5 [Caenorhabditis elegans] ref|NP_507225.1| Serpentine Receptor, class W family member (srw-43) [Caenorhabditis elegans] 0.0
blast CAB07190 Hypothetical protein F14F8.6 [Caenorhabditis elegans] ref|NP_507223.1| Serpentine Receptor, class W family member (srw-44) [Caenorhabditis elegans] 0.0
blast CAB07186 Hypothetical protein F14F8.5 [Caenorhabditis elegans] ref|NP_507225.1| Serpentine Receptor, class W family member (srw-43) [Caenorhabditis elegans] 1.0E-172
blast CAB07190 Hypothetical protein F14F8.6 [Caenorhabditis elegans] ref|NP_507223.1| Serpentine Receptor, class W family member (srw-44) [Caenorhabditis elegans] 1.0E-114
blast CAE17813 Hypothetical protein F14F8.11 [Caenorhabditis elegans] ref|NP_001023799.1| Serpentine Receptor, class W family member (srw-42) [Caenorhabditis elegans] 1.0E-102
blast CAE17813 Hypothetical protein F14F8.11 [Caenorhabditis elegans] ref|NP_001023799.1| Serpentine Receptor, class W family member (srw-42) [Caenorhabditis elegans] 3.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 1.1E-33
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 9.8E-37
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 3.2E-25
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 1.1E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507225.1 7 26-48,61-83,116-138,150-172,227-249,269-291,306-328
F14F8.5 7 26-48,61-83,116-138,150-172,227-249,269-291,306-328
GENEFINDER00000022531 15 41-63,70-92,126-148,169-191,243-265,286-308,323-345,366-397,417-439,475-497,529-551,563-585,640-662,682-704,719-741
Sequence
Target Sequence 
>C. ELEGANS:179326_AT
atctttttagtgttgccattctggattcttagcttctttcaaaaaacactgttcccagaa
cttaagtggaaaccttctccagaatgtcttggatttccttctaattatacacaaattcaa
tatagatttctggcaattgaattaactggtgaatttggatatgagttaacagaaactatg
aataatgtaaaaggaatcctatttaaatttctgccttctatagctctttcgcttgcaact
ttcgctttggtttttgagatcagaaagcggaagaagaataaatggacaacaggcagcaaa
aaagagcggaccacgaaattagtttccgtcgtcacattttcatttctccttgcaattgtt
ccacaaggaatattattcatgattatgttcaaagtgtacgaaacatctgtattgggagct
gtcatcgagcaattgtccattacattatcgtttgtatctgttatgaatggaattattcat
ttattaattatttattccatgtcctccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTTTTAGTGTTGCCATTCTGGA 82 31 499 Antisense
GCCATTCTGGATTCTTAGCTTCTTT 240 281 513 Antisense
GGAAACCTTCTCCAGAATGTCTTGG 483 527 566 Antisense
GAATGTCTTGGATTTCCTTCTAATT 40 331 580 Antisense
AATTTCTGCCTTCTATAGCTCTTTC 89 175 704 Antisense
TATAGCTCTTTCGCTTGCAACTTTC 379 659 717 Antisense
CGAAATTAGTTTCCGTCGTCACATT 513 251 812 Antisense
CATTTTCATTTCTCCTTGCAATTGT 482 215 833 Antisense
ATCTGTATTGGGAGCTGTCATCGAG 172 35 903 Antisense
GTCATCGAGCAATTGTCCATTACAT 404 467 919 Antisense
TAATTATTTATTCCATGTCCTCCGA 398 635 983 Antisense
Sequence Source Affymetrix Proprietary Database