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[179325_at]

Description T10G3.1 /REP_DB=WormBase Gene ID /WP=CE13561 /TR=P92018 /GB=CAB03324.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 84      6grp_total > 48      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1763
1 2 3 4 range
A 1231.2
(0.2)
P 		805.9
(-1.5)
P 		422.5
(-3)
P 		1950.8
(3)
P 		1528
B 1323
(0.2)
P 		845.3
(-1.5)
P 		394.2
(-3)
P 		2157.4
(3)
P 		1763
C 1298.2
(-0.1)
P 		775.8
(-2.1)
P 		528.9
(-3)
P 		2111.6
(3)
P 		1583
avr 1284.1
(0.1) 		809
(-1.7) 		448.5
(-3) 		2073.3
(3) 		1625

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 834
1 2 3 4 5 6 range
A 1157.8
(3)
P 		448.9
(-2.3)
P 		354.6
(-3)
P 		408
(-2.6)
P 		383.9
(-2.8)
P 		795.8
(0.3)
P 		803
B 886.9
(3)
P 		457.1
(-1.6)
P 		377.8
(-2.4)
P 		344.7
(-2.8)
P 		323.8
(-3)
P 		840.4
(2.5)
P 		563
C 864.1
(2.4)
P 		401.9
(-2.3)
P 		424.6
(-2.1)
P 		499.2
(-1.3)
P 		331.2
(-3)
P 		928.1
(3)
P 		597
avr 969.6
(3) 		436
(-2.1) 		385.7
(-2.6) 		417.3
(-2.3) 		346.3
(-3) 		854.8
(1.9) 		623
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 368
1 2 3 4 range
A 448.3
(3)
P 		174.9
(-1.9)
P 		110.5
(-3)
P 		285.6
(0.1)
P 		338
B 421.9
(2.4)
P 		208.8
(-1.1)
P 		91.4
(-3)
P 		459.7
(3)
P 		368
C 429.8
(3)
P 		223
(-2.1)
P 		184.3
(-3)
P 		356
(1.2)
P 		246
avr 433.3
(3) 		202.2
(-1.6) 		128.7
(-3) 		367.1
(1.7) 		305

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 243
1 2 3 4 5 6 range
A 213.4
(3)
P 		159.7
(0.6)
P 		77.2
(-3)
P 		103.5
(-1.8)
P 		115.9
(-1.3)
P 		193.7
(2.1)
P 		136
B 308.6
(2.9)
P 		152.2
(-1.4)
P 		91.7
(-3)
P 		91.3
(-3)
P 		131.6
(-1.9)
P 		313.4
(3)
P 		222
C 320.3
(3)
P 		122.6
(-2.4)
P 		108.1
(-2.8)
P 		100.4
(-3)
P 		107.2
(-2.8)
P 		310.7
(2.7)
P 		220
avr 280.8
(3) 		144.8
(-1.3) 		92.3
(-3) 		98.4
(-2.8) 		118.2
(-2.2) 		272.6
(2.7) 		189
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179325_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12861
Sequence Type Exemplar sequence
Representative Public ID T10G3.1 NCBI
Target Description T10G3.1 /REP_DB=WormBase Gene ID /WP=CE13561 /TR=P92018 /GB=CAB03324.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073942(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073942 NCBI Caenorhabditis elegans T10G3.1 (T10G3.1) mRNA, complete cds. 11/11 None
SNAP00000037912 ENSEMBL cdna:SNAP chromosome:CEL140:V:13471899:13472916:-1 11/11 None
GENEFINDER00000037922 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13471903:13474755:-1 11/11 None
T10G3.1 ENSEMBL cdna:known chromosome:CEL140:V:13471690:13476175:-1 gene:T10G3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13471898-13472752(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10G3.1
Entrez Gene 188388 Entrez gene
SwissProt P92018 EMBL-EBI
WormBase CE31065 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03324 Hypothetical protein T10G3.1 [Caenorhabditis elegans] ref|NP_506343.2| T10G3.1 [Caenorhabditis elegans] 1.0E-163
blast CAB03324 Hypothetical protein T10G3.1 [Caenorhabditis elegans] ref|NP_506343.2| T10G3.1 [Caenorhabditis elegans] 1.0E-143
blast CAB03324 Hypothetical protein T10G3.1 [Caenorhabditis elegans] ref|NP_506343.2| T10G3.1 [Caenorhabditis elegans] 1.0E-113
blast CAE62581 Hypothetical protein CBG06695 [Caenorhabditis briggsae] 4.0E-80
blast CAE62581 Hypothetical protein CBG06695 [Caenorhabditis briggsae] 6.0E-80
blast CAE62581 Hypothetical protein CBG06695 [Caenorhabditis briggsae] 3.0E-79
Sequence
Target Sequence 
>C. ELEGANS:179325_AT
gcacctacagaaccattaaccgctaacgatgatatgtacaaaaaagttgaatatgtagtt
caaccgacttcaaatgaacttacacctactacggatagatcatctgagccaattgtcgtt
ggtgaagatccttcctactactcaacaacaccgtctgatcagcaagctagtgcagaggca
aaagcatggatttcagtgtctacaacagttccgaagtttgagggagacattgatgaagat
gatctacccccgccaccagctactgaggatacggagaatgaagaacctgaggaggaatgt
ttggcaaataaagaaaaattgagtgatgaagttattgaaaaacttcaagcagaaactaca
atgtactatagacttgtccgtcaacgaaatgagcaacaaaaagagtattgtggaggtgga
gaagccagagatacatcttccgatatgttcagaagatgtagtaattggagagccgagaaa
cttgtctactattacaaattgatgcgtaaaacctattgccaagttgacaattggccaaat
tcgccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACCTACAGAACCATTAACCGCTA 448 315 76 Antisense
GAATATGTAGTTCAACCGACTTCAA 22 321 124 Antisense
CAAATGAACTTACACCTACTACGGA 408 145 146 Antisense
AGATCATCTGAGCCAATTGTCGTTG 577 65 172 Antisense
TGGTGAAGATCCTTCCTACTACTCA 624 551 195 Antisense
TACTACTCAACAACACCGTCTGATC 275 643 211 Antisense
CACCGTCTGATCAGCAAGCTAGTGC 474 201 224 Antisense
GCATGGATTTCAGTGTCTACAACAG 235 311 259 Antisense
GTACTATAGACTTGTCCGTCAACGA 390 455 438 Antisense
TGATGCGTAAAACCTATTGCCAAGT 376 563 575 Antisense
GTTGACAATTGGCCAAATTCGCCGA 2 439 598 Antisense
Sequence Source Affymetrix Proprietary Database