[Home] | [Total List]

[179324_at]

Description F22B3.7 /REP_DB=WormBase Gene ID /WP=CE03258 /TR=Q19703 /GB=CAA92739.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 2.5
(-3)
A 		23.7
(-1.3)
A 		11.5
(-2.3)
A 		78.4
(3)
A 		76
B 6.4
(-3)
A 		16.2
(-0.7)
A 		31.9
(3)
A 		10.1
(-2.1)
A 		26
C 2.1
(-3)
A 		2.5
(-3)
A 		3.3
(-2.9)
A 		53
(3)
A 		51
avr 3.7
(-3) 		14.1
(-1.6) 		15.6
(-1.4) 		47.2
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 5
(-1.2)
A 		10.8
(3)
A 		4.8
(-1.4)
A 		6
(-0.5)
A 		2.6
(-3)
A 		2.7
(-2.9)
A 		8
B 4.2
(-1.2)
A 		8.2
(2.8)
A 		4.1
(-1.3)
A 		8.4
(3)
A 		2.4
(-3)
A 		3
(-2.4)
A 		6
C 1.8
(-2.9)
A 		30.6
(3)
A 		7.1
(-1.8)
A 		5
(-2.2)
A 		3.1
(-2.6)
A 		1.2
(-3)
A 		29
avr 3.7
(-2.4) 		16.5
(3) 		5.3
(-1.7) 		6.5
(-1.2) 		2.7
(-2.8) 		2.3
(-3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.9
(-3)
A 		5.1
(-0.6)
A 		3
(-1.8)
A 		11.5
(3)
A 		11
B 2
(-3)
A 		4
(-0.8)
A 		7.4
(3)
A 		2.1
(-2.9)
A 		5
C 0.7
(-3)
A 		0.7
(-3)
A 		1.1
(-2.7)
A 		8.9
(3)
A 		8
avr 1.2
(-3) 		3.3
(-1) 		3.8
(-0.5) 		7.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.9
(-2.6)
A 		3.9
(3)
A 		1.1
(-2.3)
A 		1.5
(-1.5)
A 		0.8
(-2.8)
A 		0.7
(-3)
A 		3
B 1.4
(-1.6)
A 		2.7
(3)
A 		1
(-3)
A 		2.2
(1.2)
A 		1
(-3)
A 		1.1
(-2.6)
A 		2
C 0.7
(-2.8)
A 		9.3
(3)
A 		1.8
(-2.1)
A 		1
(-2.6)
A 		1
(-2.6)
A 		0.4
(-3)
A 		9
avr 1
(-2.6) 		5.3
(3) 		1.3
(-2.2) 		1.6
(-1.8) 		0.9
(-2.7) 		0.7
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179324_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9670
Sequence Type Exemplar sequence
Representative Public ID F22B3.7 NCBI
Target Description F22B3.7 /REP_DB=WormBase Gene ID /WP=CE03258 /TR=Q19703 /GB=CAA92739.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069757(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069757 NCBI Caenorhabditis elegans F22B3.7 (F22B3.7) mRNA, complete cds. 11/11 None
SNAP00000028591 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11417552:11418645:-1 10/11 None
GENEFINDER00000028599 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11415538:11421767:-1 11/11 None
F22B3.7 ENSEMBL cdna:known chromosome:CEL140:IV:11417552:11418645:-1 gene:F22B3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11417557-11418651(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22B3.7
Entrez Gene 184808 Entrez gene
SwissProt Q19703 EMBL-EBI
WormBase CE35501 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71003 Hypothetical protein K10F12.5 [Caenorhabditis elegans] ref|NP_497194.1| K10F12.5 [Caenorhabditis elegans] 0.0
blast AAC72298 reverse transcriptase [Caenorhabditis elegans] 0.0
blast C87861 protein F43G9.7 [imported] - Caenorhabditis elegans 0.0
blast CAA92739 Hypothetical protein F22B3.7 [Caenorhabditis elegans] ref|NP_502158.2| F22B3.7 [Caenorhabditis elegans] 1.0E-163
blast CAA92739 Hypothetical protein F22B3.7 [Caenorhabditis elegans] ref|NP_502158.2| F22B3.7 [Caenorhabditis elegans] 1.0E-138
blast AAF36070 Hypothetical protein Y77E11A.9 [Caenorhabditis elegans] ref|NP_500080.2| Y77E11A.9 [Caenorhabditis elegans] 3.0E-61
blast AAF36070 Hypothetical protein Y77E11A.9 [Caenorhabditis elegans] ref|NP_500080.2| Y77E11A.9 [Caenorhabditis elegans] 1.0E-52
blast CAE62118 Hypothetical protein CBG06158 [Caenorhabditis briggsae] 8.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 2.4E-61
Sequence
Target Sequence 
>C. ELEGANS:179324_AT
ggcacaaatgccccaacttttgacaatcaaaatgcaacgggaactctctttgttgactac
gttccttcgaaatgggcaaggcatgttaattacaatatttattctgatggggatgtatgg
aaaatgtcatatagtggttggttaaaattagaaatccgtaaagagctaattgaaattgtt
tcaagtgaactacagttgcaacaaaaatttcttgggttacgtgggtcatgcagatggatc
aggtttatgtactgtcatgacgtacgaaccaatctatttccattgcttaaaactcctcaa
acttatgctaggatggacggaatgaggaccactgcttgtagagctacaccaaaaactgca
gagtgtatgtcaccgcagggtttcacattcgccggaccgccagtgacaacattcgaaaat
tacaattgggttactgatgcatctgcaatggcgactccagacgataactgccttgtgttg
gtttttgataataacaatactccaaaagttgatgttaaagggtgttctggagccacaagt
ccgctgagcgcgcatgtagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACAAATGCCCCAACTTTTGACA 236 535 145 Antisense
AACTCTCTTTGTTGACTACGTTCCT 600 139 186 Antisense
GGGTTACGTGGGTCATGCAGATGGA 360 497 358 Antisense
GACGTACGAACCAATCTATTTCCAT 10 379 403 Antisense
TATTTCCATTGCTTAAAACTCCTCA 607 659 419 Antisense
GAATGAGGACCACTGCTTGTAGAGC 408 331 464 Antisense
GTGTATGTCACCGCAGGGTTTCACA 77 487 507 Antisense
TGATGCATCTGCAATGGCGACTCCA 346 565 579 Antisense
GGCGACTCCAGACGATAACTGCCTT 616 541 594 Antisense
AAGGGTGTTCTGGAGCCACAAGTCC 230 159 662 Antisense
CAAGTCCGCTGAGCGCGCATGTAGC 680 183 680 Antisense
Sequence Source Affymetrix Proprietary Database