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[179323_s_at]

Description C14A6.2 /REP_DB=WormBase Gene ID /WP=CE18494 /TR=Q9XVE0 /GB=CAB03882.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 22      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 61      6grp_total > 22      4grp_total > 02      6grp_highest_sub > 02      6grp_high1_sub > De      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1073
1 2 3 4 range
A 197.5
(-2.6)
P 		167.6
(-2.8)
P 		130
(-3)
P 		1197.5
(3)
P 		1068
B 211.2
(-2.6)
P 		172.6
(-2.8)
P 		142.7
(-3)
P 		1202.5
(3)
P 		1060
C 153.5
(-3)
P 		240.7
(-2.5)
P 		148.6
(-3)
P 		1174.9
(3)
P 		1026
avr 187.4
(-2.7) 		193.6
(-2.7) 		140.4
(-3) 		1191.6
(3) 		1051

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 474.4
(1)
P 		566.3
(3)
P 		523.3
(2.1)
P 		436.9
(0.2)
P 		372.3
(-1.2)
P 		288
(-3)
P 		278
B 449.6
(0.8)
P 		564.2
(3)
P 		416.3
(0.1)
P 		428.1
(0.4)
P 		477.9
(1.3)
P 		254.9
(-3)
P 		309
C 483.1
(2.7)
P 		497.5
(3)
P 		472.5
(2.4)
P 		295
(-1.9)
P 		460
(2.1)
P 		248.2
(-3)
P 		249
avr 469
(1.4) 		542.7
(3) 		470.7
(1.5) 		386.7
(-0.4) 		436.7
(0.7) 		263.7
(-3) 		279
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 71.9
(-1.4)
P 		36.4
(-2.9)
P 		34
(-3)
P 		175.3
(3)
P 		141
B 67.4
(-2.1)
P 		42.6
(-2.7)
P 		33.1
(-3)
P 		256.3
(3)
P 		223
C 50.8
(-3)
P 		69.2
(-2.3)
P 		51.8
(-3)
P 		198.1
(3)
P 		147
avr 63.4
(-2.2) 		49.4
(-2.7) 		39.6
(-3) 		209.9
(3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 87.4
(-2.2)
P 		201.4
(3)
P 		114
(-1)
P 		110.8
(-1.1)
P 		112.3
(-1.1)
P 		70.1
(-3)
P 		131
B 156.4
(0.7)
P 		187.8
(2.6)
P 		101.1
(-2.6)
P 		113.4
(-1.9)
P 		194.2
(3)
P 		95
(-3)
P 		99
C 179
(3)
P 		151.8
(1.6)
P 		120.3
(0.1)
P 		59.3
(-3)
P 		148.9
(1.5)
P 		83.1
(-1.8)
P 		120
avr 140.9
(0.6) 		180.3
(3) 		111.8
(-1.2) 		94.5
(-2.3) 		151.8
(1.2) 		82.7
(-3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179323_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12875
Sequence Type Exemplar sequence
Representative Public ID C14A6.2 NCBI
Target Description C14A6.2 /REP_DB=WormBase Gene ID /WP=CE18494 /TR=Q9XVE0 /GB=CAB03882.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075144(11), NM_075430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075144 NCBI Caenorhabditis elegans C14A6.2 (C14A6.2) mRNA, complete cds. 11/11 A 
NM_075430 NCBI Caenorhabditis elegans M162.5 (M162.5) mRNA, complete cds. 11/11 A 
SNAP00000032745 ENSEMBL cdna:SNAP chromosome:CEL140:V:19759057:19764757:1 11/11 None
C14A6.2 ENSEMBL cdna:known chromosome:CEL140:V:18151385:18156970:1 gene:C14A6.2 11/11 A 
M162.5.1 ENSEMBL cdna:known chromosome:CEL140:V:19759047:19764757:1 gene:M162.5 11/11 None
M162.5.2 ENSEMBL cdna:known chromosome:CEL140:V:19759049:19764757:1 gene:M162.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009392 7/11 Cross Hyb Matching Probes None
GENEFINDER00000009403 8/11 Cross Hyb Matching Probes None
GENEFINDER00000032755 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18151384-18156970(+) 96.03 100.0
Public Domain and Genome References
Gene Title

Ensembl C14A6.2
M162.5
Entrez Gene 180300 Entrez gene
182583 Entrez gene
SwissProt Q9XVE0 EMBL-EBI
Q9U3A4 EMBL-EBI
WormBase CE36425 Wormbase
CE23879 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03882 Hypothetical protein C14A6.2 [Caenorhabditis elegans] ref|NP_507545.2| C14A6.2 [Caenorhabditis elegans] 0.0
blast CAB05257 Hypothetical protein M162.5 [Caenorhabditis elegans] ref|NP_507831.1| M162.5 [Caenorhabditis elegans] 0.0
blast CAE61620 Hypothetical protein CBG05546 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507545.2 11 26-48,55-76,86-108,115-137,147-166,209-231,246-268,280-301,306-328,341-363,373-395
NP_507831.1 12 40-62,90-112,119-138,153-172,179-201,211-230,274-296,311-333,345-366,371-393,406-428,438-460
C14A6.2 11 26-48,55-76,86-108,115-137,147-166,209-231,246-268,280-301,306-328,341-363,373-395
M162.5.1 12 40-62,90-112,119-138,153-172,179-201,211-230,274-296,311-333,345-366,371-393,406-428,438-460
M162.5.2 12 40-62,90-112,119-138,153-172,179-201,211-230,274-296,311-333,345-366,371-393,406-428,438-460
SNAP00000032745 12 40-62,90-112,119-138,153-172,179-201,211-230,274-296,311-333,345-366,371-393,406-428,438-460
Sequence
Target Sequence 
>C. ELEGANS:179323_S_AT
gatcttatagccgtccaactgattcacatctactcacctgtctatttacacgatattgga
ggctattcagtggagaagaccggctttgcagcggccgtaccggtgctgtttcagtttttc
atgaagctttttgcaggccactccagtgaccgaatctctggagtatctgagaccacaaag
ctccggatctacaatacaattgctctgggcgccagcgctgtatttctagctgctcttggt
tttgtgaaggaaggccaaggactgactggcctgatactcatgactgtagcaaccgcgatg
ttcggattcaatggtggaggttttattaagtgcgccgcccttgtctcccgacagcacaat
cattttgtcatggcaaacgtccagtttctgctgtgcctctcgatgcttctctgtccaata
ctagtatcatttttgcttcgacacggaactatagccgaatggagattggttttctttgtt
cacgccggaattcttgcagtttgtaatcttatattttgtctgttggccactgcaaaaccg
gctccatggacagatcggacgttgaagccatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTTATAGCCGTCCAACTGATTC 324 419 661 Antisense
CAACTGATTCACATCTACTCACCTG 536 187 676 Antisense
CAGTGGAGAAGACCGGCTTTGCAGC 138 207 728 Antisense
CCACTCCAGTGACCGAATCTCTGGA 273 275 798 Antisense
TCTCCCGACAGCACAATCATTTTGT 325 611 1004 Antisense
ATTTTGTCATGGCAAACGTCCAGTT 68 13 1022 Antisense
GTATCATTTTTGCTTCGACACGGAA 331 453 1084 Antisense
GAGATTGGTTTTCTTTGTTCACGCC 127 395 1122 Antisense
TATATTTTGTCTGTTGGCCACTGCA 621 661 1170 Antisense
CTGTTGGCCACTGCAAAACCGGCTC 546 235 1180 Antisense
GACAGATCGGACGTTGAAGCCATCG 430 369 1209 Antisense
Sequence Source Affymetrix Proprietary Database