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[179322_at]

Description C14A6.2 /REP_DB=WormBase Gene ID /WP=CE18494 /TR=Q9XVE0 /GB=CAB03882.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 17      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 39.4
(-1)
A 		28.9
(-3)
A 		55.4
(2.1)
A 		60
(3)
A 		31
B 39.5
(-2.9)
A 		49
(0)
A 		39.1
(-3)
A 		58.8
(3)
A 		20
C 27
(-3)
A 		48.8
(-0.4)
A 		37.8
(-1.7)
A 		76.6
(3)
A 		50
avr 35.3
(-3) 		42.2
(-1.6) 		44.1
(-1.2) 		65.1
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 80.5
(3)
A 		42.6
(-0.5)
A 		16.4
(-3)
A 		47.4
(-0.1)
A 		26.6
(-2)
A 		56.6
(0.8)
A 		64
B 50.2
(1.9)
A 		56.4
(3)
A 		36.9
(-0.5)
A 		30.5
(-1.6)
A 		35.9
(-0.6)
A 		22.5
(-3)
A 		34
C 26.8
(-3)
A 		42.6
(-0)
A 		58.8
(3)
M 		29.2
(-2.6)
A 		49.3
(1.2)
P 		54.3
(2.2)
A 		32
avr 52.5
(3) 		47.2
(1.1) 		37.4
(-2.4) 		35.7
(-3) 		37.3
(-2.4) 		44.5
(0.1) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 14.3
(2.9)
A 		6.3
(-3)
A 		14.5
(3)
A 		8.8
(-1.2)
A 		8
B 12.6
(3)
A 		12.1
(2.1)
A 		9.1
(-3)
A 		12.5
(2.8)
A 		4
C 8.9
(-3)
A 		14
(3)
A 		13.2
(2.1)
A 		12.9
(1.7)
A 		5
avr 11.9
(1.4) 		10.8
(-3) 		12.3
(3) 		11.4
(-0.6) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 14.8
(2.8)
A 		15.2
(3)
A 		3.6
(-3)
A 		12
(1.3)
A 		8
(-0.7)
A 		13.8
(2.3)
A 		12
B 17.5
(2.3)
A 		18.8
(3)
A 		9
(-2.5)
A 		8.1
(-3)
A 		14.6
(0.6)
A 		8.4
(-2.8)
A 		11
C 9.9
(-1)
A 		13
(0.5)
A 		15
(1.4)
M 		5.9
(-3)
A 		15.9
(1.9)
P 		18.2
(3)
A 		12
avr 14.1
(1.6) 		15.7
(3) 		9.2
(-2.6) 		8.7
(-3) 		12.8
(0.5) 		13.5
(1.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179322_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12875
Sequence Type Exemplar sequence
Representative Public ID C14A6.2 NCBI
Target Description C14A6.2 /REP_DB=WormBase Gene ID /WP=CE18494 /TR=Q9XVE0 /GB=CAB03882.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075144 NCBI Caenorhabditis elegans C14A6.2 (C14A6.2) mRNA, complete cds. 11/11 A 
SNAP00000009392 ENSEMBL cdna:SNAP chromosome:CEL140:V:18151385:18159385:1 10/11 None
GENEFINDER00000009403 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18155676:18159385:1 10/11 None
C14A6.2 ENSEMBL cdna:known chromosome:CEL140:V:18151385:18156970:1 gene:C14A6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18151384-18156970(+) 96.03 100.0
Public Domain and Genome References
Gene Title
Ensembl C14A6.2
Entrez Gene 182583 Entrez gene
SwissProt Q9XVE0 EMBL-EBI
WormBase CE36425 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03882 Hypothetical protein C14A6.2 [Caenorhabditis elegans] ref|NP_507545.2| C14A6.2 [Caenorhabditis elegans] 0.0
blast CAB05257 Hypothetical protein M162.5 [Caenorhabditis elegans] ref|NP_507831.1| M162.5 [Caenorhabditis elegans] 0.0
blast CAE61620 Hypothetical protein CBG05546 [Caenorhabditis briggsae] 0.0
blast CAB03882 Hypothetical protein C14A6.2 [Caenorhabditis elegans] ref|NP_507545.2| C14A6.2 [Caenorhabditis elegans] 1.0E-174
blast CAB05257 Hypothetical protein M162.5 [Caenorhabditis elegans] ref|NP_507831.1| M162.5 [Caenorhabditis elegans] 1.0E-168
blast CAE61620 Hypothetical protein CBG05546 [Caenorhabditis briggsae] 1.0E-151
blast CAB03882 Hypothetical protein C14A6.2 [Caenorhabditis elegans] ref|NP_507545.2| C14A6.2 [Caenorhabditis elegans] 1.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-13
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507545.2 11 26-48,55-76,86-108,115-137,147-166,209-231,246-268,280-301,306-328,341-363,373-395
C14A6.2 11 26-48,55-76,86-108,115-137,147-166,209-231,246-268,280-301,306-328,341-363,373-395
SNAP00000009392 9 26-48,55-76,86-108,115-137,147-166,209-231,246-268,280-299,304-326
GENEFINDER00000009403 3 49-69,79-101,133-155
Sequence
Target Sequence 
>C. ELEGANS:179322_AT
ctactcacctgtctatttacacgatattggaggctattcagtggagaagaccggctttgc
agcggccgtaccggtgctgtttcagtttttcatgaagctttttgcaggccactccagtga
ccgaatctctggagtatctgagaccacaaagctccggatctacaatacaattgctctggg
cgccagcgctgtatttctagctgctcttggttttgtgaaggaaggccaaggactgactgg
cctgatactcatgactgtagcaaccgcgatgttcggattcaatggtggaggttttattaa
gtgcgccgcccttgtctcccgacagcacaatcattttgtcatggcaaacgtccagtttct
gctgtgcctctcgatgcttctctgtccaatactagtatcatttttgcttcgacacggaac
tatagccgaatggagattggttttctttgttcacgccggaattcttgcagtttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACTCACCTGTCTATTTACACGAT 49 227 690 Antisense
ACACGATATTGGAGGCTATTCAGTG 121 109 708 Antisense
ACCGGTGCTGTTTCAGTTTTTCATG 17 89 759 Antisense
GAGTATCTGAGACCACAAAGCTCCG 439 399 821 Antisense
GCGCCAGCGCTGTATTTCTAGCTGC 348 287 869 Antisense
CTAGCTGCTCTTGGTTTTGTGAAGG 400 225 886 Antisense
GTGAAGGAAGGCCAAGGACTGACTG 452 479 904 Antisense
TGACTGGCCTGATACTCATGACTGT 662 565 923 Antisense
CATGACTGTAGCAACCGCGATGTTC 455 209 939 Antisense
CGCGATGTTCGGATTCAATGGTGGA 460 253 954 Antisense
TTCACGCCGGAATTCTTGCAGTTTG 656 685 1139 Antisense
Sequence Source Affymetrix Proprietary Database