[Home] | [Total List]

[179321_at]

Description B0250.4 /REP_DB=WormBase Gene ID /WP=CE18480 /TR=Q9XVF8 /GB=CAB03791.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 10.3
(-2.7)
A 		6.5
(-3)
A 		7.9
(-2.9)
A 		78.5
(3)
A 		72
B 35.8
(3)
A 		19.5
(-0.2)
A 		4.9
(-3)
A 		11.4
(-1.7)
A 		31
C 39.9
(0.5)
A 		13.2
(-2.3)
A 		6
(-3)
A 		63.8
(3)
A 		58
avr 28.7
(-0) 		13.1
(-2.1) 		6.3
(-3) 		51.2
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 28.2
(-0.1)
A 		40.8
(1.7)
A 		8.4
(-3)
A 		20.1
(-1.3)
A 		22
(-1)
A 		49.5
(3)
A 		41
B 12.3
(-1.5)
A 		21.5
(0.4)
A 		22.3
(0.5)
A 		5.2
(-3)
A 		14.5
(-1.1)
A 		34.2
(3)
A 		29
C 27
(0.5)
A 		5.6
(-3)
A 		11.6
(-2)
A 		23.3
(-0.1)
A 		29.7
(1)
A 		41.8
(3)
A 		36
avr 22.5
(-1.2) 		22.6
(-1.2) 		14.1
(-3) 		16.2
(-2.5) 		22.1
(-1.3) 		41.8
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.7
(-1.6)
A 		1.4
(-3)
A 		2.1
(-2.6)
A 		11.5
(3)
A 		10
B 11.4
(3)
A 		4.8
(-0.8)
A 		1.1
(-3)
A 		2.4
(-2.2)
A 		10
C 13.2
(3)
A 		3.8
(-2.1)
A 		2.1
(-3)
A 		10.8
(1.7)
A 		11
avr 9.4
(3) 		3.3
(-1.8) 		1.8
(-3) 		8.2
(2.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.2
(-1.4)
A 		14.5
(3)
A 		1.8
(-3)
A 		5.1
(-1.4)
A 		6.6
(-0.7)
A 		12
(1.8)
A 		13
B 4.3
(-1.5)
A 		7.1
(0)
A 		5.4
(-0.9)
A 		1.4
(-3)
A 		5.9
(-0.6)
A 		12.7
(3)
A 		11
C 10
(1)
A 		1.7
(-3)
A 		2.9
(-2.4)
A 		4.7
(-1.5)
A 		9.6
(0.9)
A 		14
(3)
A 		12
avr 6.5
(-1) 		7.8
(-0.2) 		3.4
(-3) 		3.7
(-2.8) 		7.4
(-0.5) 		12.9
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179321_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13313
Sequence Type Exemplar sequence
Representative Public ID B0250.4 NCBI
Target Description B0250.4 /REP_DB=WormBase Gene ID /WP=CE18480 /TR=Q9XVF8 /GB=CAB03791.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075535(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075535 NCBI Caenorhabditis elegans B0250.4 (B0250.4) mRNA, complete cds. 11/11 None
SNAP00000043581 ENSEMBL cdna:SNAP chromosome:CEL140:V:20456705:20459876:-1 11/11 None
GENEFINDER00000043602 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20456705:20462537:-1 11/11 None
B0250.4 ENSEMBL cdna:known chromosome:CEL140:V:20456705:20462537:-1 gene:B0250.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20456704-20462537(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0250.4
Entrez Gene 181882 Entrez gene
SwissProt Q9XVF8 EMBL-EBI
WormBase CE18480 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03791 Hypothetical protein B0250.4 [Caenorhabditis elegans] ref|NP_507936.1| B0250.4 [Caenorhabditis elegans] 0.0
blast CAB03791 Hypothetical protein B0250.4 [Caenorhabditis elegans] ref|NP_507936.1| B0250.4 [Caenorhabditis elegans] 1.0E-129
blast CAA83620 Hypothetical protein R07E5.5 [Caenorhabditis elegans] ref|NP_497887.1| R07E5.5 [Caenorhabditis elegans] 8.0E-10
blast CAD56605 Hypothetical protein Y17G7B.22 [Caenorhabditis elegans] ref|NP_871969.1| Y17G7B.22 [Caenorhabditis elegans] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:179321_AT
gatcgttgcccaatgcggtttggaaccgagtcggcgttgaattttcaccaatatgagaca
tatgaagagggacttgacaagagaactggcaaacgatcgtggtatggggtgatggaagta
tctaaacaacgtagggagcattacatttccgaagaagatttttacactaaattcccagga
gcatgtaacaaatgcttcagcaattttgataccgcggagctcatgttggagcacaaaagc
gagaagcatccaggatgggaacacgaggagaaaccaaaagtttatgctgacgatgaatat
accttctattgccaagagaaaatgtgttatggagcatttcttttggagcaagaccttatt
tatcatcaacaaaaagttcaccccaagcagctcaaaacagaaaatgtaattttctgcaat
aaatgcagttatgaatatttccacgaaacaagcaagtttttggctcatagccaacaacgg
cacgacggaacagcaacggcagttccgagaatgattaagcacatcccgtcaggtggcaca
tctctcctaccatgtgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCGTTGCCCAATGCGGTTTGGAA 646 375 826 Antisense
CCGAGTCGGCGTTGAATTTTCACCA 286 263 851 Antisense
AGAGAACTGGCAAACGATCGTGGTA 581 67 905 Antisense
TTGATACCGCGGAGCTCATGTTGGA 152 701 1031 Antisense
GAATATACCTTCTATTGCCAAGAGA 42 327 1120 Antisense
GAGCAAGACCTTATTTATCATCAAC 175 391 1171 Antisense
AACAAAAAGTTCACCCCAAGCAGCT 688 127 1193 Antisense
GGCTCATAGCCAACAACGGCACGAC 182 539 1287 Antisense
GCACGACGGAACAGCAACGGCAGTT 338 313 1305 Antisense
ATTAAGCACATCCCGTCAGGTGGCA 150 13 1339 Antisense
GCACATCTCTCCTACCATGTGAAAA 456 317 1361 Antisense
Sequence Source Affymetrix Proprietary Database