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[179320_at]

Description F15B9.4 /REP_DB=WormBase Gene ID /WP=CE20685 /TR=Q19479 /GB=CAB01425.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 91      6grp_total > 77      4grp_total > 18      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 137.7
(-2.8)
P 		176.8
(-1.3)
P 		132.4
(-3)
P 		293.2
(3)
P 		161
B 143.4
(-3)
P 		171.3
(-2.1)
P 		171.4
(-2.1)
P 		326.2
(3)
P 		183
C 159.7
(-2.9)
P 		204.1
(-1.1)
P 		158.2
(-3)
P 		305.2
(3)
P 		147
avr 146.9
(-3) 		184.1
(-1.6) 		154
(-2.7) 		308.2
(3) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 142.2
(-3)
P 		168.9
(-2.2)
P 		182.5
(-1.8)
P 		167.3
(-2.2)
P 		272.2
(1)
P 		337.6
(3)
P 		195
B 126.2
(-3)
P 		126.4
(-3)
P 		242.8
(-1)
P 		219.3
(-1.4)
P 		191.8
(-1.9)
P 		475.2
(3)
P 		349
C 214.3
(-0.9)
P 		154.2
(-2.4)
P 		127.9
(-3)
P 		127.9
(-3)
P 		238.7
(-0.4)
P 		379
(3)
P 		251
avr 160.9
(-2.7) 		149.8
(-3) 		184.4
(-2.2) 		171.5
(-2.5) 		234.2
(-1) 		397.3
(3) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 50.1
(3)
P 		38.4
(-1.5)
P 		34.6
(-3)
P 		42.9
(0.2)
P 		16
B 45.7
(-1.8)
P 		42.3
(-2.5)
P 		39.7
(-3)
P 		69.5
(3)
P 		30
C 52.9
(-1.8)
P 		58.7
(3)
P 		55.1
(0)
P 		51.5
(-3)
P 		7
avr 49.6
(0.4) 		46.5
(-1.2) 		43.1
(-3) 		54.6
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 26.2
(-3)
P 		60.1
(0.6)
P 		39.8
(-1.5)
P 		42.4
(-1.3)
P 		82.1
(3)
P 		82.2
(3)
P 		56
B 43.9
(-2.9)
P 		42.1
(-3)
P 		59
(-2.2)
P 		58.1
(-2.3)
P 		77.9
(-1.4)
P 		177.2
(3)
P 		135
C 79.4
(0.2)
P 		47.1
(-1.7)
P 		32.6
(-2.6)
P 		25.7
(-3)
P 		77.2
(0.1)
P 		126.9
(3)
P 		101
avr 49.8
(-2.5) 		49.8
(-2.5) 		43.8
(-2.9) 		42.1
(-3) 		79.1
(-0.4) 		128.8
(3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179320_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12581
Sequence Type Exemplar sequence
Representative Public ID F15B9.4 NCBI
Target Description F15B9.4 /REP_DB=WormBase Gene ID /WP=CE20685 /TR=Q19479 /GB=CAB01425.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073852(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073852 NCBI Caenorhabditis elegans F15B9.4 (F15B9.4) mRNA, complete cds. 11/11 None
SNAP00000032633 ENSEMBL cdna:SNAP chromosome:CEL140:V:13004933:13009214:1 11/11 None
GENEFINDER00000032639 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13004933:13009214:1 11/11 None
F15B9.4 ENSEMBL cdna:known chromosome:CEL140:V:13004933:13009560:1 gene:F15B9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13007457-13009214(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15B9.4
Entrez Gene 179786 Entrez gene
SwissProt Q19479 EMBL-EBI
WormBase CE37351 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3779 actin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01425 Hypothetical protein F15B9.4 [Caenorhabditis elegans] ref|NP_506253.3| F15B9.4 [Caenorhabditis elegans] 0.0
blast XP_421396 PREDICTED: similar to adenylosuccinate synthetase:ISOTYPE=muscle [Gallus gallus] 1.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR003104 EMBL-EBI Actin-binding FH2 8.1E-75
Pfam IPR003104 EMBL-EBI Actin-binding FH2 8.1E-75
Pfam IPR003104 EMBL-EBI Actin-binding FH2 8.1E-75
Sequence
Target Sequence 
>C. ELEGANS:179320_AT
gaaacgctgattgccgcatacgaaccgtttgtgaatcaaacgaatgagaaacttcaaaac
gtgcagaatggtctttccgatttgaaagctcgtgagactgagcttcaagtttatctttgc
gctggtaacatgacactacaggcaattttcgaaacgctcgagcaaagcatgaaaatcgtt
tctgatgctgtgaagcaggcagctacaaaaaatcgactgacacgagcttcgtcactagtc
acacttccaacgtcgtcggtttctcgaagatcgctgagagaaggagaagttctttcacgg
cagtcgatggcattgaaaacgagagatctgccagttgaagaactcaaaaagatgttcctg
cattcatcgtttggaccgcaaagagccaaaagatcggttgcatcgccgttgacaacatcg
aatacttcaccgaatcgaactattcgccgtcgaagtggattggtctcaacagaacgcgag
tcgattcctgcaaaagatgtcggatgtgaacctgaaaatccacaaactctagcgacttca
tcgcaacaagaaccgccatctgtatctgctattcgtcgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACGCTGATTGCCGCATACGAAC 164 359 916 Antisense
GCTTCAAGTTTATCTTTGCGCTGGT 551 305 1017 Antisense
ATCGACTGACACGAGCTTCGTCACT 230 35 1127 Antisense
GTTCTTTCACGGCAGTCGATGGCAT 524 443 1204 Antisense
GTTCCTGCATTCATCGTTTGGACCG 582 439 1269 Antisense
ATCGGTTGCATCGCCGTTGACAACA 484 33 1308 Antisense
TTCGCCGTCGAAGTGGATTGGTCTC 102 683 1358 Antisense
AACGCGAGTCGATTCCTGCAAAAGA 617 145 1388 Antisense
ATCCACAAACTCTAGCGACTTCATC 337 41 1433 Antisense
GACTTCATCGCAACAAGAACCGCCA 430 371 1449 Antisense
CCATCTGTATCTGCTATTCGTCGTG 356 271 1471 Antisense
Sequence Source Affymetrix Proprietary Database