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[179319_at]

Description R07H5.9 /REP_DB=WormBase Gene ID /WP=CE12566 /TR=Q93935 /GB=CAB03231.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 46      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 128.4
(3)
A 		58.2
(-3)
A 		72.5
(-1.8)
A 		63.8
(-2.5)
A 		70
B 119.8
(3)
A 		108.7
(1.6)
A 		73.3
(-2.7)
A 		70.5
(-3)
A 		49
C 143.5
(3)
A 		79.2
(-0.7)
A 		39.6
(-3)
A 		62.3
(-1.7)
A 		104
avr 130.6
(3) 		82
(-1.2) 		61.8
(-3) 		65.5
(-2.7) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 20.8
(-3)
A 		51.9
(-1)
A 		66.8
(-0)
A 		114.3
(3)
A 		50.1
(-1.1)
A 		108.8
(2.6)
A 		94
B 61
(-2)
A 		55.3
(-2.8)
A 		53.8
(-3)
A 		59.9
(-2.2)
A 		98.3
(3)
A 		83.8
(1)
A 		45
C 89.5
(0.6)
A 		45.1
(-3)
A 		87.4
(0.4)
A 		119.9
(3)
A 		105.3
(1.8)
A 		93.2
(0.9)
A 		75
avr 57.1
(-2.2) 		50.8
(-3) 		69.3
(-0.6) 		98
(3) 		84.6
(1.3) 		95.3
(2.7) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 46.8
(3)
A 		12.6
(-2.5)
A 		18.9
(-1.5)
A 		9.3
(-3)
A 		38
B 38.2
(3)
A 		26.8
(0.1)
A 		17
(-2.5)
A 		15
(-3)
A 		23
C 47.5
(3)
A 		22.8
(-1)
A 		13.8
(-2.5)
A 		10.5
(-3)
A 		37
avr 44.2
(3) 		20.7
(-1.3) 		16.6
(-2.1) 		11.6
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 3.8
(-3)
A 		18.5
(0.5)
A 		14.5
(-0.5)
A 		29
(3)
A 		15.1
(-0.3)
A 		26.5
(2.4)
A 		25
B 21.2
(-1.2)
A 		18.4
(-1.8)
A 		13.1
(-3)
A 		15.9
(-2.4)
A 		39.9
(3)
A 		31.3
(1.1)
A 		27
C 33.2
(2.7)
A 		13.8
(-3)
A 		22.2
(-0.5)
A 		24.1
(0)
A 		34.1
(3)
A 		31.2
(2.1)
A 		20
avr 19.4
(-1.7) 		16.9
(-2.9) 		16.6
(-3) 		23
(-0.1) 		29.7
(3) 		29.7
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179319_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10021
Sequence Type Exemplar sequence
Representative Public ID R07H5.9 NCBI
Target Description R07H5.9 /REP_DB=WormBase Gene ID /WP=CE12566 /TR=Q93935 /GB=CAB03231.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069702(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069702 NCBI Caenorhabditis elegans R07H5.9 (R07H5.9) mRNA, complete cds. 10/11 None
SNAP00000030266 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11207502:11209113:1 9/11 None
GENEFINDER00000030270 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11207502:11209113:1 9/11 None
R07H5.9 ENSEMBL cdna:known chromosome:CEL140:IV:11207502:11209222:1 gene:R07H5.9 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11207507-11209287(+) 95.67 100.0
Public Domain and Genome References
Gene Title
Ensembl R07H5.9
Entrez Gene 187690 Entrez gene
SwissProt Q93935 EMBL-EBI
WormBase CE30682 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03231 Hypothetical protein R07H5.9 [Caenorhabditis elegans] ref|NP_502103.2| R07H5.9 [Caenorhabditis elegans] 1.0E-122
blast CAB03231 Hypothetical protein R07H5.9 [Caenorhabditis elegans] ref|NP_502103.2| R07H5.9 [Caenorhabditis elegans] 1.0E-112
blast CAB03231 Hypothetical protein R07H5.9 [Caenorhabditis elegans] ref|NP_502103.2| R07H5.9 [Caenorhabditis elegans] 1.0E-111
blast CAE62021 Hypothetical protein CBG06031 [Caenorhabditis briggsae] 3.0E-43
blast CAE62021 Hypothetical protein CBG06031 [Caenorhabditis briggsae] 2.0E-42
blast CAE62021 Hypothetical protein CBG06031 [Caenorhabditis briggsae] 4.0E-42
Sequence
Target Sequence 
>C. ELEGANS:179319_AT
gagcttcacgttgcatttgatgttccaactaatcaaacaacttttcaatattcaatagtt
tgggaagattcaagtccagatgccgatgaaaagtatcgagtttcatgcactgaggctaac
aaaattatgttggcactcaaggagaaaaatatcaagaagactagcaaacttatgggatac
aaaataaccaatgagaaaagtcgtacaaactcgttgagagagaaagcgagtgaaacattg
aacaacggactcccatttcctccagatcttcgcagccgttctcaacagtgtgaagtgtct
gaatcaagaagctcttcagttactgcttcttcttccgctccaacatctacaacttgctat
gattctgaaccgacgaaatcggacacatcgaaaaaatcatcgaagaaatctcgaaaaagt
agccgttcttcaaaggttccacatagaaagttcaagaacgtaggatctttggatgaaaac
ggatgtgtaaatgtcaaagtagttgtcatcgagagaccaatcatccgagataaactcagc
cgtggcagtgtcgttctggttctggatctgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTTCACGTTGCATTTGATGTTC 121 389 145 Antisense
GAAGATTCAAGTCCAGATGCCGATG 421 337 208 Antisense
GTATCGAGTTTCATGCACTGAGGCT 554 453 237 Antisense
ATTGAACAACGGACTCCCATTTCCT 618 5 381 Antisense
CGCAGCCGTTCTCAACAGTGTGAAG 307 255 415 Antisense
AAGCTCTTCAGTTACTGCTTCTTCT 706 149 453 Antisense
CGCTCCAACATCTACAACTTGCTAT 691 255 480 Antisense
CAACTTGCTATGATTCTGAACCGAC 56 189 494 Antisense
GTAGCCGTTCTTCAAAGGTTCCACA 31 441 563 Antisense
AACTCAGCCGTGGCAGTGTCGTTCT 165 139 677 Antisense
TGTCGTTCTGGTTCTGGATCTGATT 25 559 693 Antisense
Sequence Source Affymetrix Proprietary Database