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[179318_at]

Description F31D4.8 /REP_DB=WormBase Gene ID /WP=CE15934 /TR=O45423 /GB=CAB07376.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 34      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 72      6grp_total > 01      4grp_total > 17      6grp_highest_sub > 02      6grp_high1_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1000
1 2 3 4 range
A 144.4
(-3)
P 		351
(-1.6)
P 		331.5
(-1.7)
P 		1005.5
(3)
P 		861
B 125.8
(-3)
P 		345.3
(-1.7)
P 		300.7
(-1.9)
P 		1111.2
(3)
P 		985
C 111.6
(-3)
P 		443.4
(-0.6)
P 		485.8
(-0.3)
P 		929.5
(3)
P 		818
avr 127.3
(-3) 		379.9
(-1.3) 		372.7
(-1.3) 		1015.4
(3) 		888

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 384.7
(-1.7)
P 		449.5
(2.5)
P 		456.3
(3)
P 		377.9
(-2.2)
P 		365.8
(-3)
P 		386.8
(-1.6)
P 		91
B 554
(1.9)
P 		602.9
(3)
P 		336.2
(-2.9)
P 		378.9
(-1.9)
P 		448.4
(-0.4)
P 		330.9
(-3)
P 		272
C 316.7
(-3)
P 		544.7
(3)
P 		387.8
(-1.1)
P 		389.2
(-1.1)
P 		384.4
(-1.2)
P 		418.4
(-0.3)
P 		228
avr 418.5
(-1.4) 		532.4
(3) 		393.4
(-2.4) 		382
(-2.9) 		399.5
(-2.2) 		378.7
(-3) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 52.6
(-3)
P 		76.2
(-1.5)
P 		86.7
(-0.8)
P 		147.2
(3)
P 		95
B 40.1
(-3)
P 		85.3
(-1.6)
P 		69.7
(-2.1)
P 		236.8
(3)
P 		197
C 36.9
(-3)
P 		127.5
(1.1)
P 		169.3
(3)
P 		156.7
(2.4)
P 		132
avr 43.2
(-3) 		96.3
(-0.7) 		108.6
(-0.1) 		180.2
(3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 70.9
(-3)
P 		159.9
(3)
P 		99.4
(-1.1)
P 		95.9
(-1.3)
P 		110.4
(-0.3)
P 		94.2
(-1.4)
P 		89
B 192.8
(2.6)
P 		200.7
(3)
P 		81.7
(-3)
P 		100.4
(-2.1)
P 		182.2
(2.1)
P 		123.4
(-0.9)
P 		119
C 117.4
(-0.3)
P 		166.2
(3)
P 		98.7
(-1.6)
P 		78.3
(-3)
P 		124.4
(0.1)
P 		140.1
(1.2)
P 		88
avr 127
(-0.5) 		175.6
(3) 		93.3
(-2.9) 		91.5
(-3) 		139
(0.4) 		119.2
(-1) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179318_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12596
Sequence Type Exemplar sequence
Representative Public ID F31D4.8 NCBI
Target Description F31D4.8 /REP_DB=WormBase Gene ID /WP=CE15934 /TR=O45423 /GB=CAB07376.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075631(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075631 NCBI Caenorhabditis elegans F31D4.8 (F31D4.8) mRNA, complete cds. 11/11 None
GENEFINDER00000041993 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20865001:20866480:-1 11/11 None
F31D4.8 ENSEMBL cdna:known chromosome:CEL140:V:20864839:20866480:-1 gene:F31D4.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041987 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20865000-20866471(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31D4.8
Entrez Gene 185150 Entrez gene
SwissProt O45423 EMBL-EBI
WormBase CE15934 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07376 Hypothetical protein F31D4.8 [Caenorhabditis elegans] ref|NP_508032.1| F31D4.8 [Caenorhabditis elegans] 5.0E-92
blast CAE61630 Hypothetical protein CBG05560 [Caenorhabditis briggsae] 2.0E-72
blast CAB03466 Hypothetical protein W02D9.10 [Caenorhabditis elegans] ref|NP_493180.1| W02D9.10 [Caenorhabditis elegans] 2.0E-57
Sequence
Target Sequence 
>C. ELEGANS:179318_AT
tagctttggaaccggatttttcgcaacctcgtcttcttgccaacgcgagtataacggaaa
cagagaatcggatgttcaacaaaaatcatcaattgctggtttaaaaggatctcttcgccg
caactcatcgaatctctcacaagatttttccactaatcttcagaatgaaatttgtcacgc
tgatgcaacaaatattgaaatcaactgctcttcctctgcaaggcgtgcgttctacgttcg
agttgaagttccaactggtgaacaaggattaatccatttgtcatcttcgtctactacgga
aatttttactccactccaaaccggatgtgggcatggaaaatggaagttcatcgtttgtac
tatggaaaatggaagtgagatcgcacactcaaatgtttcccgtaacttggatggagttgg
aattctcttcttcaatgtttttgatgacttggaaatttgtctcacacgacaggagtttct
tca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCTTTGGAACCGGATTTTTCGCA 176 627 42 Antisense
TCGTCTTCTTGCCAACGCGAGTATA 550 603 70 Antisense
TTTAAAAGGATCTCTTCGCCGCAAC 96 667 141 Antisense
TCTCTCACAAGATTTTTCCACTAAT 53 613 174 Antisense
CGTGCGTTCTACGTTCGAGTTGAAG 45 245 265 Antisense
TAATCCATTTGTCATCTTCGTCTAC 148 637 311 Antisense
ACTCCACTCCAAACCGGATGTGGGC 615 97 349 Antisense
GGAAGTTCATCGTTTGTACTATGGA 554 531 383 Antisense
ATCGCACACTCAAATGTTTCCCGTA 164 37 421 Antisense
GATGGAGTTGGAATTCTCTTCTTCA 360 407 451 Antisense
GTCTCACACGACAGGAGTTTCTTCA 542 469 500 Antisense
Sequence Source Affymetrix Proprietary Database