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[179317_at]

Description F18E2.4 /REP_DB=WormBase Gene ID /WP=CE05665 /TR=Q19556 /GB=CAA99837.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 39      4grp_total > 18      6grp_cgc > 07      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 82.2
(-3)
A 		104.3
(-2)
M 		104.7
(-2)
P 		211.2
(3)
P 		129
B 53.7
(-3)
A 		108.6
(-0.9)
P 		98.9
(-1.3)
P 		213.9
(3)
P 		160
C 66.2
(-2.5)
A 		126.4
(-0.9)
P 		45.5
(-3)
A 		276
(3)
P 		231
avr 67.4
(-3) 		113.1
(-1.4) 		83
(-2.4) 		233.7
(3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 65.1
(-0.2)
M 		44.5
(-2.8)
A 		54.9
(-1.5)
P 		42.5
(-3)
A 		91.2
(3)
P 		86.6
(2.4)
P 		49
B 79.2
(3)
A 		74.2
(2)
P 		62
(-0.5)
A 		49.3
(-3)
P 		68.2
(0.8)
P 		57.3
(-1.4)
P 		30
C 71.2
(2.3)
M 		79.4
(3)
P 		60
(1.4)
M 		8.6
(-3)
A 		39.5
(-0.4)
P 		58.9
(1.3)
P 		71
avr 71.8
(3) 		66
(2.1) 		59
(1) 		33.5
(-3) 		66.3
(2.1) 		67.6
(2.3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 29.9
(2.3)
A 		22.6
(-3)
M 		27.4
(0.5)
P 		30.9
(3)
P 		8
B 17.1
(-3)
A 		26.8
(-1)
P 		22.9
(-1.8)
P 		45.6
(3)
P 		29
C 21.9
(-1.8)
A 		36.3
(1)
P 		15.9
(-3)
A 		46.5
(3)
P 		31
avr 23
(-2.7) 		28.6
(-0.9) 		22.1
(-3) 		41
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 12
(-2.6)
M 		15.8
(-1.2)
A 		12
(-2.6)
P 		10.8
(-3)
A 		27.5
(3)
P 		21.1
(0.7)
P 		17
B 27.6
(3)
A 		24.7
(1.8)
P 		15
(-2.2)
A 		13.1
(-3)
P 		27.7
(3)
P 		21.4
(0.4)
P 		15
C 26.4
(3)
M 		24.2
(2.5)
P 		15.3
(0.3)
M 		1.7
(-3)
A 		12.8
(-0.3)
P 		19.7
(1.4)
P 		25
avr 22
(2.7) 		21.6
(2.5) 		14.1
(-0.6) 		8.5
(-3) 		22.7
(3) 		20.7
(2.2) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179317_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13249
Sequence Type Exemplar sequence
Representative Public ID F18E2.4 NCBI
Target Description F18E2.4 /REP_DB=WormBase Gene ID /WP=CE05665 /TR=Q19556 /GB=CAA99837.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073793(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073793 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-43) (srt-43) mRNA, complete cds. 11/11 None
SNAP00000032115 ENSEMBL cdna:SNAP chromosome:CEL140:V:12771858:12773435:1 10/11 None
GENEFINDER00000032118 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12771321:12773435:1 10/11 None
F18E2.4 ENSEMBL cdna:known chromosome:CEL140:V:12771858:12773152:1 gene:F18E2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12771638-12773152(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srt-43
Ensembl F18E2.4
Entrez Gene 179750 Entrez gene
SwissProt Q19556 EMBL-EBI
WormBase CE37826 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99837 Hypothetical protein F18E2.4 [Caenorhabditis elegans] ref|NP_506194.2| Serpentine Receptor, class T family member (srt-43) [Caenorhabditis elegans] 0.0
blast CAE63993 Hypothetical protein CBG08586 [Caenorhabditis briggsae] 1.0E-142
blast CAE63993 Hypothetical protein CBG08586 [Caenorhabditis briggsae] 1.0E-133
blast CAB70255 Hypothetical protein M199.1 [Caenorhabditis elegans] ref|NP_502823.1| Serpentine Receptor, class T family member (srt-44) [Caenorhabditis elegans] 5.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.2E-117
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.2E-117
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506194.2 7 37-59,71-93,108-130,151-173,211-228,249-268,272-294
F18E2.4 7 37-59,71-93,108-130,151-173,211-228,249-268,272-294
SNAP00000032115 7 37-59,71-93,108-130,151-173,211-228,249-268,272-294
GENEFINDER00000032118 7 80-102,114-136,151-173,194-216,254-271,292-311,315-337
Sequence
Target Sequence 
>C. ELEGANS:179317_AT
tgtttttgacgttctctgtcgtcctgtgtccgaatttctatttgacggaaaacgtgtatt
cttctccattgctctgatctacacatatggaactttggtttccatgttttctccatctat
catattcaattcggccataatggcatggattgcagatccattgacaattgatccagaata
caaaaccgatgagattaccgactggtaccgtaaccatgtccaatcaacaaacaattggat
cttctgctctggcacgtgcaccctctacgccatttattgcgtcctcatcaacaaaatgca
aaggggacagaaatcaaaagcatcacgtcaagtattcatccaatcaagcattatttgttc
tttcaacacattctctgcaatgtcatataatgctttgatgttcacagttcctgctccatg
ggtgattgcgattgcagaactgtgttggtcaattgttcatggatgtccagctatcatcta
tctcacaatgaacaaaaccattcgaacagagtttttgaaatttctcaaattgaagaaaac
aaataaggtaaacaatgcaacttccttttccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTTTGACGTTCTCTGTCGTCCT 558 561 462 Antisense
TGTCGTCCTGTGTCCGAATTTCTAT 26 557 478 Antisense
AAAACGTGTATTCTTCTCCATTGCT 270 131 510 Antisense
CTCCATTGCTCTGATCTACACATAT 615 235 525 Antisense
TTCCATGTTTTCTCCATCTATCATA 327 701 561 Antisense
AAACAATTGGATCTTCTGCTCTGGC 420 129 690 Antisense
CACCCTCTACGCCATTTATTGCGTC 8 201 720 Antisense
TGTTCTTTCAACACATTCTCTGCAA 604 561 817 Antisense
CTGCTCCATGGGTGATTGCGATTGC 407 237 872 Antisense
ATGTCCAGCTATCATCTATCTCACA 277 49 924 Antisense
TAAACAATGCAACTTCCTTTTCCAA 469 639 1010 Antisense
Sequence Source Affymetrix Proprietary Database