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[179316_at]

Description F58H1.6 /REP_DB=WormBase Gene ID /WP=CE06030 /TR=Q21015 /GB=CAB00109.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 33      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 4.6
(-3)
A 		63.1
(2)
A 		75.4
(3)
A 		55.5
(1.3)
A 		71
B 18
(-3)
A 		38.8
(2)
A 		24.7
(-1.4)
A 		43.2
(3)
A 		25
C 29.6
(-3)
A 		53.6
(-0.5)
A 		58
(-0.1)
A 		87.7
(3)
P 		58
avr 17.4
(-3) 		51.8
(1.6) 		52.7
(1.7) 		62.1
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 4.6
(-3)
A 		4.3
(-3)
A 		5.2
(-2.9)
A 		62.6
(0.7)
A 		92.5
(2.6)
P 		99
(3)
P 		95
B 4.7
(-3)
A 		62
(-1)
A 		54.9
(-1.3)
A 		49.6
(-1.5)
A 		179.1
(3)
P 		149.4
(2)
P 		174
C 6.6
(-2.9)
A 		27.5
(-2.1)
A 		3.3
(-3)
A 		102.1
(0.7)
P 		85.4
(0)
P 		165.6
(3)
P 		162
avr 5.3
(-3) 		31.3
(-1.8) 		21.1
(-2.3) 		71.4
(-0) 		119
(2.1) 		138
(3) 		133
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 1.7
(-3)
A 		13.7
(1)
A 		19.7
(3)
A 		8.1
(-0.9)
A 		18
B 5.7
(-3)
A 		9.6
(3)
A 		5.7
(-3)
A 		9.2
(2.4)
A 		4
C 9.8
(-3)
A 		15.4
(0.2)
A 		20.2
(3)
A 		14.8
(-0.1)
P 		10
avr 5.7
(-3) 		12.9
(1.5) 		15.2
(3) 		10.7
(0.2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.5
(-2.9)
A 		1.1
(-3)
A 		15.9
(0.3)
A 		27.9
(3)
P 		24.1
(2.2)
P 		27
B 1.6
(-3)
A 		20.7
(-1.4)
A 		13.3
(-2)
A 		13.1
(-2)
A 		72.8
(3)
P 		55.7
(1.6)
P 		71
C 2.5
(-2.8)
A 		8.4
(-2.2)
A 		0.8
(-3)
A 		20.5
(-0.8)
P 		27.6
(-0.1)
P 		55.4
(3)
P 		55
avr 1.7
(-3) 		10.2
(-1.8) 		5.1
(-2.5) 		16.5
(-1) 		42.8
(2.7) 		45.1
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179316_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12528
Sequence Type Exemplar sequence
Representative Public ID F58H1.6 NCBI
Target Description F58H1.6 /REP_DB=WormBase Gene ID /WP=CE06030 /TR=Q21015 /GB=CAB00109.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073598 NCBI Caenorhabditis elegans F58H1.6 (F58H1.6) mRNA, complete cds. 11/11 None
SNAP00000006510 ENSEMBL cdna:SNAP chromosome:CEL140:V:11945549:11947159:1 11/11 None
GENEFINDER00000006517 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11945549:11947159:1 11/11 None
F58H1.6 ENSEMBL cdna:known chromosome:CEL140:V:11945549:11947159:1 gene:F58H1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11945548-11947159(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58H1.6
Entrez Gene 186549 Entrez gene
SwissProt Q21015 EMBL-EBI
WormBase CE06030 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00109 Hypothetical protein F58H1.6 [Caenorhabditis elegans] ref|NP_505999.1| F58H1.6 [Caenorhabditis elegans] 1.0E-112
blast AAC04436 Hypothetical protein M70.2 [Caenorhabditis elegans] ref|NP_500181.1| M70.2 [Caenorhabditis elegans] 3.0E-52
blast CAE75356 Hypothetical protein CBG23337 [Caenorhabditis briggsae] 5.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505999.1 1 58-80
F58H1.6 1 58-80
SNAP00000006510 1 58-80
GENEFINDER00000006517 1 58-80
Sequence
Target Sequence 
>C. ELEGANS:179316_AT
ctatcaccactacattgttcacctggctcattttgttcttcttttggtactcttcgcgtc
gttttgagaagaagaagattcactttccaagtagacgacgccgttttgtggattatctca
ttaatgcacagcgatcggaaaaattggaactaaattctcaacaacaacttggaaatagac
actcgggatctagcgagttggtcaagtcggaaagtcggaagaaagccaaaagttctaacc
agaaagaaaaagtcaagccagagaaaagaggaagagcaacagcaaccactggtgccggac
caactatagatcagagcttgaagggccccacaggaactactatggcatctgaaagaggaa
tgacaatgactcagacaatccaaaaagaaaaatcaattaaaaagaagaaatcggaaaaag
atgaaagaaagagagcaaaagaagtgggaaatgaagaagctgcagctgacaatcagacgg
ttactcaaggaaatgatacgacaactacacaaggaccatcttccatgtttcctgccgatt
tatccaagaaacacagattgggattgcaaaaagttaaggagcgtgcagtggaagtgcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATCACCACTACATTGTTCACCTG 179 225 206 Antisense
TCACTTTCCAAGTAGACGACGCCGT 385 627 285 Antisense
ACGACGCCGTTTTGTGGATTATCTC 115 93 300 Antisense
CGGGATCTAGCGAGTTGGTCAAGTC 356 243 389 Antisense
GGTGCCGGACCAACTATAGATCAGA 437 501 496 Antisense
TAGATCAGAGCTTGAAGGGCCCCAC 14 653 512 Antisense
GGCCCCACAGGAACTACTATGGCAT 371 543 529 Antisense
GACAATGACTCAGACAATCCAAAAA 378 365 567 Antisense
GAAATGATACGACAACTACACAAGG 303 359 695 Antisense
CAAGGACCATCTTCCATGTTTCCTG 687 183 715 Antisense
TAAGGAGCGTGCAGTGGAAGTGCCT 566 635 780 Antisense
Sequence Source Affymetrix Proprietary Database