[Home] | [Total List]

[179315_at]

Description C50F4.4 /REP_DB=WormBase Gene ID /WP=CE05469 /TR=Q18741 /GB=CAA94739.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 91      6grp_total > 97      4grp_total > 01      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 183.7
(-0.9)
P 		136.9
(-3)
P 		170.8
(-1.5)
P 		268.5
(3)
P 		132
B 154.2
(-3)
P 		171.5
(-2.4)
P 		181.6
(-2.1)
P 		338.7
(3)
P 		185
C 170.9
(-2)
P 		143.4
(-3)
P 		195.9
(-1.2)
P 		315
(3)
P 		172
avr 169.6
(-2.3) 		150.6
(-3) 		182.8
(-1.8) 		307.4
(3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 183
1 2 3 4 5 6 range
A 166.1
(-3)
P 		173.2
(-2.5)
P 		193
(-1)
P 		214.4
(0.6)
P 		191
(-1.1)
P 		245.6
(3)
P 		80
B 143
(-3)
P 		220.9
(-0)
P 		190
(-1.2)
P 		198.5
(-0.9)
P 		264.5
(1.6)
P 		299.8
(3)
P 		157
C 116.6
(-3)
P 		143.3
(-2.1)
P 		151.4
(-1.8)
P 		148.7
(-1.9)
P 		241.3
(1.1)
P 		297.7
(3)
P 		181
avr 141.9
(-3) 		179.1
(-1.4) 		178.1
(-1.4) 		187.2
(-1) 		232.3
(0.9) 		281
(3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 66.9
(3)
P 		29.7
(-3)
P 		44.6
(-0.6)
P 		39.3
(-1.5)
P 		37
B 49.2
(-1.6)
P 		42.4
(-2.9)
P 		42.1
(-3)
P 		72.2
(3)
P 		30
C 56.6
(0.4)
P 		41.2
(-3)
P 		68.3
(3)
P 		53.1
(-0.4)
P 		27
avr 57.6
(3) 		37.8
(-3) 		51.7
(1.2) 		54.9
(2.2) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 30.6
(-3)
P 		61.6
(3)
P 		42
(-0.8)
P 		54.4
(1.6)
P 		57.6
(2.2)
P 		59.8
(2.7)
P 		31
B 49.8
(-2.7)
P 		73.5
(-0.5)
P 		46.1
(-3)
P 		52.6
(-2.4)
P 		107.5
(2.6)
P 		111.8
(3)
P 		66
C 43.2
(-1.9)
P 		43.7
(-1.8)
P 		38.5
(-2.3)
P 		29.9
(-3)
P 		78.1
(1.1)
P 		99.6
(3)
P 		70
avr 41.2
(-3) 		59.6
(-0.8) 		42.2
(-2.9) 		45.6
(-2.5) 		81.1
(1.9) 		90.4
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179315_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12015
Sequence Type Exemplar sequence
Representative Public ID C50F4.4 NCBI
Target Description C50F4.4 /REP_DB=WormBase Gene ID /WP=CE05469 /TR=Q18741 /GB=CAA94739.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073058(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073058 NCBI Caenorhabditis elegans C50F4.4 (C50F4.4) mRNA, complete cds. 10/11 None
SNAP00000009313 ENSEMBL cdna:SNAP chromosome:CEL140:V:9539409:9541884:1 9/11 None
GENEFINDER00000009326 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9539409:9540140:1 10/11 None
C50F4.4 ENSEMBL cdna:known chromosome:CEL140:V:9539409:9540140:1 gene:C50F4.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9539408-9540140(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50F4.4
Entrez Gene 183678 Entrez gene
SwissProt Q18741 EMBL-EBI
WormBase CE33985 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94739 Hypothetical protein C50F4.4 [Caenorhabditis elegans] ref|NP_505459.2| C50F4.4 [Caenorhabditis elegans] 1.0E-103
blast CAA94739 Hypothetical protein C50F4.4 [Caenorhabditis elegans] ref|NP_505459.2| C50F4.4 [Caenorhabditis elegans] 2.0E-83
blast CAE72191 Hypothetical protein CBG19299 [Caenorhabditis briggsae] 2.0E-71
blast CAE72191 Hypothetical protein CBG19299 [Caenorhabditis briggsae] 4.0E-56
Sequence
Target Sequence 
>C. ELEGANS:179315_AT
atgggactcgtcgcattcaattttaaaatcgaaaatcacaaatcgagcgtcgatcaggat
attagagcgatatccagtgaaagaaaaaaatgaagtagaaacactatttgatcaagaaga
gatggctggaggtgattcagaagcccttttcaaattggtaattgcagcatgttcattttt
aatacaattaattcaaattttccagtgtcatcaactcttgaatgtttggaagtatgccat
ttacttccagccgaaatctgaagtttttattgatacattacaagagaacggttatcctga
tgctgttgtcaaaggaattctggaagcctatacttctgaaaccttttcccaattattcga
atcacttgcttcatgctctcattccggaattccacgtgttctgtcaacagactggacttc
acgaacagttgtacgtcgaaacaatattccatcatccgatcgtgaagctgtcctgacctt
ttcgactgatcaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGACTCGTCGCATTCAATTTTA 223 51 33 Antisense
GGAGGTGATTCAGAAGCCCTTTTCA 113 517 160 Antisense
AATTTTCCAGTGTCATCAACTCTTG 539 175 228 Antisense
CCATTTACTTCCAGCCGAAATCTGA 400 267 269 Antisense
GAACGGTTATCCTGATGCTGTTGTC 58 349 318 Antisense
TATACTTCTGAAACCTTTTCCCAAT 633 659 361 Antisense
ATTCGAATCACTTGCTTCATGCTCT 451 9 387 Antisense
GGACTTCACGAACAGTTGTACGTCG 459 523 446 Antisense
GAAACAATATTCCATCATCCGATCG 7 357 470 Antisense
TCATCCGATCGTGAAGCTGTCCTGA 442 619 484 Antisense
TCCTGACCTTTTCGACTGATCAAGG 573 593 503 Antisense
Sequence Source Affymetrix Proprietary Database