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[179314_at]

Description F14H3.8 /REP_DB=WormBase Gene ID /WP=CE15832 /TR=O45368 /GB=CAB05488.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 28      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 3.7
(-2.9)
A 		24.1
(0.8)
A 		3.2
(-3)
A 		36.6
(3)
A 		33
B 16.3
(3)
A 		4
(-2.1)
A 		1.9
(-3)
A 		2.2
(-2.9)
A 		14
C 20.4
(3)
A 		12.2
(0.5)
A 		0.8
(-3)
A 		7.1
(-1.1)
A 		20
avr 13.5
(2.2) 		13.4
(2.1) 		2
(-3) 		15.3
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 9.6
(-0.2)
A 		3
(-2.4)
A 		1.2
(-3)
A 		18.9
(3)
A 		12.6
(0.9)
A 		2.6
(-2.5)
A 		18
B 11.5
(-0.7)
A 		15
(0.1)
A 		1.3
(-3)
A 		28
(3)
A 		5.5
(-2.1)
A 		7.1
(-1.7)
A 		27
C 2.5
(-2.7)
A 		11.9
(-0.5)
A 		27.6
(3)
A 		2
(-2.8)
A 		1
(-3)
A 		22.8
(1.9)
A 		27
avr 7.9
(-2.1) 		10
(-0.8) 		10
(-0.8) 		16.3
(3) 		6.4
(-3) 		10.8
(-0.3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.4
(-2.2)
A 		5.2
(2.7)
A 		0.8
(-3)
A 		5.4
(3)
A 		5
B 5.2
(3)
A 		1
(-2.3)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		5
C 6.7
(3)
A 		3.5
(0)
A 		0.3
(-3)
A 		1.2
(-2.2)
A 		6
avr 4.4
(3) 		3.2
(1.2) 		0.5
(-3) 		2.4
(-0.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.8
(-1)
A 		1.1
(-1.9)
A 		0.3
(-3)
A 		4.8
(3)
A 		3.8
(1.7)
A 		0.6
(-2.6)
A 		5
B 4
(0.1)
A 		5
(1)
A 		0.3
(-3)
A 		7.4
(3)
A 		2.2
(-1.4)
A 		2.6
(-1.1)
A 		7
C 0.9
(-2.5)
A 		3.6
(-0.3)
A 		7
(2.5)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		7.6
(3)
A 		7
avr 2.2
(-2.7) 		3.2
(0.1) 		2.5
(-1.9) 		4.2
(3) 		2.1
(-3) 		3.6
(1.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179314_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14400
Sequence Type Exemplar sequence
Representative Public ID F14H3.8 NCBI
Target Description F14H3.8 /REP_DB=WormBase Gene ID /WP=CE15832 /TR=O45368 /GB=CAB05488.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074641(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074641 NCBI Caenorhabditis elegans F14H3.8 (F14H3.8) mRNA, complete cds. 11/11 None
SNAP00000013825 ENSEMBL cdna:SNAP chromosome:CEL140:V:16067423:16068236:-1 11/11 None
F14H3.8 ENSEMBL cdna:known chromosome:CEL140:V:16067423:16070154:-1 gene:F14H3.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013842 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16067422-16070154(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14H3.8
Entrez Gene 184493 Entrez gene
SwissProt O45368 EMBL-EBI
WormBase CE15832 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9168 purine ribonucleoside monophosphate biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
19239 deaminase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05488 Hypothetical protein F14H3.8 [Caenorhabditis elegans] ref|NP_507042.1| F14H3.8 [Caenorhabditis elegans] 0.0
blast CAB05488 Hypothetical protein F14H3.8 [Caenorhabditis elegans] ref|NP_507042.1| F14H3.8 [Caenorhabditis elegans] 1.0E-128
blast CAA21036 Hypothetical protein Y32B12C.3 [Caenorhabditis elegans] ref|NP_507203.1| Y32B12C.3 [Caenorhabditis elegans] 6.0E-51
blast CAB16532 Hypothetical protein Y70C5A.2 [Caenorhabditis elegans] ref|NP_507204.1| Y70C5A.2 [Caenorhabditis elegans] 3.0E-46
blast CAA21036 Hypothetical protein Y32B12C.3 [Caenorhabditis elegans] ref|NP_507203.1| Y32B12C.3 [Caenorhabditis elegans] 1.0E-39
blast CAB16532 Hypothetical protein Y70C5A.2 [Caenorhabditis elegans] ref|NP_507204.1| Y70C5A.2 [Caenorhabditis elegans] 2.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.8E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.8E-12
Sequence
Target Sequence 
>C. ELEGANS:179314_AT
atgggaacagtctgaaccttttcgcaactgacatgaaaattaatttgggatctcaaaagt
cagtgattgaagaacttagtgtggatgtatctcacagcgagtacgttcgggatcgagagt
ttcggaatacaaaaatatttcttggattgttcgaggaatcattaaaatctttgggtcgct
tactttctgtgaaagaatttagtatgcaaacaggagagcaagaagagattttgcaaattt
tgtatctcgatccttctgtcattgaagtcattgagattcgaagaccatcaagtcttttca
acttcaccggactgaaaattgatgaagcttcactgcttaaccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGAACAGTCTGAACCTTTTCGC 74 49 1109 Antisense
TGAACCTTTTCGCAACTGACATGAA 147 573 1121 Antisense
GATGTATCTCACAGCGAGTACGTTC 665 409 1192 Antisense
GAGTACGTTCGGGATCGAGAGTTTC 110 393 1207 Antisense
GAATCATTAAAATCTTTGGGTCGCT 636 327 1264 Antisense
TTGGGTCGCTTACTTTCTGTGAAAG 258 709 1279 Antisense
AATTTTGTATCTCGATCCTTCTGTC 561 175 1344 Antisense
TCGATCCTTCTGTCATTGAAGTCAT 341 603 1355 Antisense
GACCATCAAGTCTTTTCAACTTCAC 521 383 1391 Antisense
AGTCTTTTCAACTTCACCGGACTGA 353 61 1399 Antisense
GATGAAGCTTCACTGCTTAACCAAT 19 411 1429 Antisense
Sequence Source Affymetrix Proprietary Database