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[179312_at]

Description F17A2.8 /REP_DB=WormBase Gene ID /WP=CE15861 /TR=O17823 /GB=CAA92176.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 10      6grp_cgc > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 12.1
(-3)
A 		18.4
(-2.3)
A 		27.8
(-1.3)
A 		67.2
(3)
P 		55
B 20.1
(1.5)
A 		25.2
(3)
A 		4.1
(-3)
A 		5.4
(-2.6)
A 		21
C 10.7
(-3)
A 		17.4
(-2.5)
A 		20.9
(-2.2)
A 		86
(3)
P 		75
avr 14.3
(-3) 		20.3
(-2.1) 		17.6
(-2.5) 		52.9
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 3.4
(-2.9)
A 		3.4
(-2.9)
A 		37.3
(3)
A 		12
(-1.4)
A 		2.7
(-3)
A 		9.9
(-1.8)
A 		35
B 20.2
(1.2)
A 		22.5
(1.8)
A 		27.3
(3)
A 		3.3
(-3)
A 		12
(-0.8)
A 		21.4
(1.5)
A 		24
C 1.4
(-3)
A 		36.2
(2.8)
A 		37.3
(3)
A 		4.7
(-2.4)
A 		1.8
(-2.9)
A 		27.3
(1.3)
A 		36
avr 8.3
(-2.4) 		20.7
(0.2) 		34
(3) 		6.7
(-2.7) 		5.5
(-3) 		19.5
(-0.1) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.4
(-2.6)
A 		4
(-3)
A 		7.3
(0.4)
A 		9.8
(3)
P 		6
B 6.4
(3)
A 		6.2
(2.8)
A 		1
(-3)
A 		1.2
(-2.8)
A 		5
C 3.5
(-3)
A 		5
(-2.2)
A 		7.3
(-0.9)
A 		14.5
(3)
P 		11
avr 4.8
(-3) 		5.1
(-2.5) 		5.2
(-2.4) 		8.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.2
(-2.5)
A 		8.1
(3)
A 		3
(-1.1)
A 		0.8
(-2.8)
A 		2.4
(-1.6)
A 		8
B 7
(2.2)
A 		7.5
(2.6)
A 		6.6
(1.8)
A 		0.9
(-3)
A 		4.9
(0.4)
A 		8
(3)
A 		7
C 0.5
(-3)
A 		11.1
(3)
A 		9.5
(2.1)
A 		0.9
(-2.8)
A 		0.6
(-2.9)
A 		9.1
(1.9)
A 		11
avr 2.7
(-2) 		6.6
(1.6) 		8.1
(3) 		1.6
(-3) 		2.1
(-2.5) 		6.5
(1.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179312_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16071
Sequence Type Exemplar sequence
Representative Public ID F17A2.8 NCBI
Target Description F17A2.8 /REP_DB=WormBase Gene ID /WP=CE15861 /TR=O17823 /GB=CAA92176.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077667(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077667 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-44) (srd-44) mRNA, complete cds. 11/11 None
F17A2.8 ENSEMBL cdna:known chromosome:CEL140:X:12338361:12340169:1 gene:F17A2.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014142 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12338360-12340169(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-44
Ensembl F17A2.8
Entrez Gene 184604 Entrez gene
SwissProt O17823 EMBL-EBI
WormBase CE15861 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92176 Hypothetical protein F17A2.8 [Caenorhabditis elegans] emb|CAA92163.1| Hypothetical protein F17A2.8 [Caenorhabditis elegans] ref|NP_510068.1| Serpentine Receptor, class D (delta) family member (srd-44) [Caenorhabditis elegans] sp|O17823|SRD44_CAEEL Serpentine receptor class delta-44 (Protein srd-44) 1.0E-155
blast CAA94167 Hypothetical protein R04D3.9 [Caenorhabditis elegans] ref|NP_510215.1| Serpentine Receptor, class D (delta) family member (srd-43) [Caenorhabditis elegans] 1.0E-116
blast CAA94165 Hypothetical protein R04D3.7 [Caenorhabditis elegans] ref|NP_510214.2| Serpentine Receptor, class D (delta) family member (srd-42) [Caenorhabditis elegans] 1.0E-106
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510068.1 6 7-29,85-107,128-150,188-205,226-248,263-285
F17A2.8 6 7-29,85-107,128-150,188-205,226-248,263-285
Sequence
Target Sequence 
>C. ELEGANS:179312_AT
aagcagcgagacatgtgcgtccttcaaagaaaaaaaattgttttgtaattttgtttattt
cgtcaattgtattaatttcagcgggatgtggaattttgctggttattatccaagcattac
ccctggaaatccgagaaaaatactatcggataaatcttgaacttgatgaatattcagtaa
ttggtatagtggattattcggttttacccagtcgtgtaaatggtattattataaatggct
tagtagttatcgttccaattacatgtttattattacgaagaaaaatactcaaacttctca
ctgcttcctccgatgcgttatacttccaaaaccgggttttccttcagggactcacattgc
aaatttttggtcatacgctggtttacgttcccattttcatttgctcaactatcagtctga
tcacaaaaacggaatatacttttgcccagtttttcatttttgtcttgccccacctaacaa
ctgtcattgatcctcttttaacaatgtattttgtgactccgtacagaaagagactaatgg
tttggttgcgactgaaaaacgataaagttcactccgtgtctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCAGCGAGACATGTGCGTCCTTC 75 151 353 Antisense
ATCCAAGCATTACCCCTGGAAATCC 675 37 460 Antisense
GGCTTAGTAGTTATCGTTCCAATTA 496 533 589 Antisense
AAATACTCAAACTTCTCACTGCTTC 141 117 635 Antisense
GATGCGTTATACTTCCAAAACCGGG 103 409 664 Antisense
GTTTTCCTTCAGGGACTCACATTGC 270 447 688 Antisense
CATTTGCTCAACTATCAGTCTGATC 90 215 750 Antisense
GAATATACTTTTGCCCAGTTTTTCA 256 325 784 Antisense
ACCTAACAACTGTCATTGATCCTCT 58 87 824 Antisense
GAGACTAATGGTTTGGTTGCGACTG 225 391 882 Antisense
CGATAAAGTTCACTCCGTGTCTCCA 206 249 912 Antisense
Sequence Source Affymetrix Proprietary Database