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[179311_at]

Description T27F6.1 /REP_DB=WormBase Gene ID /WP=CE16511 /TR=O45866 /GB=CAB04881.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 13.1
(-2.3)
A 		18.9
(-1.4)
A 		7.7
(-3)
A 		51
(3)
A 		43
B 34.3
(3)
A 		27.5
(1.6)
A 		10.7
(-1.8)
A 		5.1
(-3)
A 		29
C 8.5
(-2.4)
A 		18.9
(-0.7)
A 		4.8
(-3)
A 		41.7
(3)
A 		37
avr 18.6
(-0.4) 		21.8
(0.4) 		7.7
(-3) 		32.6
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 11.4
(-1.9)
A 		8.4
(-3)
A 		9.7
(-2.5)
A 		8.7
(-2.9)
A 		21.5
(1.6)
A 		25.4
(3)
A 		17
B 2.6
(-3)
A 		4.2
(-2.8)
A 		44.8
(3)
A 		7.5
(-2.3)
A 		26.3
(0.4)
A 		32
(1.2)
A 		42
C 29
(0.9)
A 		43.1
(3)
A 		3.5
(-3)
A 		26.7
(0.5)
A 		14.7
(-1.3)
A 		9.8
(-2)
A 		40
avr 14.3
(-3) 		18.6
(0.2) 		19.3
(0.7) 		14.3
(-3) 		20.8
(1.8) 		22.4
(3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.8
(0.1)
A 		4.1
(-0.7)
A 		2
(-3)
A 		7.5
(3)
A 		6
B 10.9
(3)
A 		6.8
(0.5)
A 		2.5
(-2.1)
A 		1.1
(-3)
A 		10
C 2.8
(-1.8)
A 		5.4
(1.2)
A 		1.7
(-3)
A 		7
(3)
A 		5
avr 6.2
(3) 		5.4
(1.8) 		2.1
(-3) 		5.2
(1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.1
(-3)
A 		3
(-1.8)
A 		2.1
(-3)
A 		2.2
(-2.9)
A 		6.5
(3)
A 		6.2
(2.6)
A 		4
B 0.9
(-3)
A 		1.4
(-2.7)
A 		10.9
(2.5)
A 		2
(-2.4)
A 		10.7
(2.3)
A 		11.9
(3)
A 		11
C 10.8
(1.8)
A 		13.2
(3)
A 		0.9
(-3)
A 		5.4
(-0.8)
A 		4.7
(-1.1)
A 		3.3
(-1.8)
A 		12
avr 4.6
(-1) 		5.9
(1) 		4.6
(-1) 		3.2
(-3) 		7.3
(3) 		7.1
(2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179311_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1133
Sequence Type Exemplar sequence
Representative Public ID T27F6.1 NCBI
Target Description T27F6.1 /REP_DB=WormBase Gene ID /WP=CE16511 /TR=O45866 /GB=CAB04881.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060764(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060764 NCBI Caenorhabditis elegans T27F6.1 (T27F6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000032613 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12478924:12482069:-1 11/11 None
T27F6.1 ENSEMBL cdna:known chromosome:CEL140:I:12479008:12481440:-1 gene:T27F6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032593 4/11 Cross Hyb Matching Probes None
SNAP00000032594 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12478938-12481371(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27F6.1
Entrez Gene 189003 Entrez gene
SwissProt O45866 EMBL-EBI
WormBase CE34213 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8375 acetylglucosaminyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04881 Hypothetical protein T27F6.1 [Caenorhabditis elegans] ref|NP_493165.2| T27F6.1 [Caenorhabditis elegans] 0.0
blast AAC26306 Hypothetical protein H41C03.3 [Caenorhabditis elegans] ref|NP_495166.2| H41C03.3 [Caenorhabditis elegans] 1.0E-151
blast AAC26306 Hypothetical protein H41C03.3 [Caenorhabditis elegans] ref|NP_495166.2| H41C03.3 [Caenorhabditis elegans] 1.0E-147
blast CAB03536 Hypothetical protein T09E11.9 [Caenorhabditis elegans] ref|NP_493125.1| T09E11.9 [Caenorhabditis elegans] 1.0E-142
blast CAB03536 Hypothetical protein T09E11.9 [Caenorhabditis elegans] ref|NP_493125.1| T09E11.9 [Caenorhabditis elegans] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 1.5E-110
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 1.8E-104
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493165.2 1 7-29
T27F6.1 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:179311_AT
gtgccaatgacgttgccattaggccagagctgggacggctcgataagaaacatttcaaat
gggatcccatgtcgctgaaattatttcggaatgaatccgaaatcgaccctgtgattctaa
atacaactttgaaatttgccaaaggagctgttcaaagttcattgtcgagagccgcagttg
attggatgactcggacagttgacttgacaactttcatagatcaatggaatcatgggacat
acggcgtggacgagcaattcacacaagcttttcaaataagtgactttctcgggatgccag
gacactttaccgacaaatgcataaagaaagggattattacagaaggtatcaccagatttg
cccaatggacacatggcgatcagagtaagtgtgcctcaaagaagagtcgtcacggaattt
gtatcatgggaatagagcatctgagcatgatggcaaaatccgaacatttgatgtttaata
aggtgttaccattattcgactactctattattgaatgcaccgctgagctcctgttcaatc
gaacctttttggggcaaatccatcatccactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCCAATGACGTTGCCATTAGGCC 116 479 752 Antisense
TAGGCCAGAGCTGGGACGGCTCGAT 8 655 771 Antisense
AATGGGATCCCATGTCGCTGAAATT 620 163 809 Antisense
AAGTTCATTGTCGAGAGCCGCAGTT 672 155 906 Antisense
ATAAGTGACTTTCTCGGGATGCCAG 500 25 1027 Antisense
GATGCCAGGACACTTTACCGACAAA 275 415 1044 Antisense
GAAGGTATCACCAGATTTGCCCAAT 316 335 1093 Antisense
GGTGTTACCATTATTCGACTACTCT 480 499 1233 Antisense
TTATTGAATGCACCGCTGAGCTCCT 311 679 1259 Antisense
GAGCTCCTGTTCAATCGAACCTTTT 455 387 1276 Antisense
TTGGGGCAAATCCATCATCCACTGA 64 709 1300 Antisense
Sequence Source Affymetrix Proprietary Database