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[179310_at]

Description T08G3.5 /REP_DB=WormBase Gene ID /WP=CE18937 /TR=Q9XU52 /GB=CAB05795.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 28      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 54
(-2.8)
A 		52.7
(-3)
A 		93.4
(3)
A 		81.1
(1.2)
A 		41
B 87.5
(1.6)
P 		107.3
(3)
A 		38.1
(-1.9)
A 		21.9
(-3)
A 		85
C 53.6
(-1)
A 		50.8
(-1.2)
A 		25.5
(-3)
A 		107.8
(3)
P 		82
avr 65
(1.2) 		70.3
(3) 		52.3
(-3) 		70.3
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 61.2
(0.8)
A 		42.4
(-2.3)
A 		74.5
(3)
A 		38.3
(-3)
A 		71.6
(2.5)
A 		49.3
(-1.2)
A 		36
B 102.1
(2.9)
A 		103.3
(3)
M 		36.9
(-2.9)
A 		62.1
(-0.7)
A 		43.9
(-2.3)
A 		35.8
(-3)
A 		68
C 21.7
(-3)
A 		57.9
(-0.2)
P 		78.2
(1.4)
A 		99.7
(3)
M 		21.1
(-3)
A 		65.6
(0.4)
A 		79
avr 61.7
(1.3) 		67.9
(3) 		63.2
(1.7) 		66.7
(2.7) 		45.5
(-3) 		50.2
(-1.7) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 19.7
(0.8)
A 		11.4
(-3)
A 		24.4
(3)
A 		11.9
(-2.8)
A 		13
B 27.9
(3)
P 		26.5
(2.6)
A 		8.8
(-1.9)
A 		4.7
(-3)
A 		23
C 17.7
(2.7)
A 		14.6
(0.7)
A 		8.9
(-3)
A 		18.2
(3)
P 		9
avr 21.8
(3) 		17.5
(0.5) 		14
(-1.6) 		11.6
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 11.3
(-2.2)
A 		15.1
(-0.3)
A 		16.2
(0.3)
A 		9.7
(-3)
A 		21.6
(3)
A 		12
(-1.8)
A 		12
B 35.5
(3)
A 		34.4
(2.8)
M 		9
(-3)
A 		16.5
(-1.3)
A 		17.8
(-1)
A 		13.3
(-2)
A 		27
C 8
(-2.5)
A 		17.7
(1.3)
P 		19.9
(2.2)
A 		20.1
(2.3)
M 		6.8
(-3)
A 		21.9
(3)
A 		15
avr 18.3
(-0.3) 		22.4
(3) 		15
(-3) 		15.4
(-2.7) 		15.4
(-2.7) 		15.7
(-2.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179310_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12964
Sequence Type Exemplar sequence
Representative Public ID T08G3.5 NCBI
Target Description T08G3.5 /REP_DB=WormBase Gene ID /WP=CE18937 /TR=Q9XU52 /GB=CAB05795.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074758(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074758 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-141) (srh-141) mRNA, complete cds. 11/11 None
T08G3.5 ENSEMBL cdna:known chromosome:CEL140:V:16446509:16448317:1 gene:T08G3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16446508-16448317(+) 99.32 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-141
Ensembl T08G3.5
Entrez Gene 188296 Entrez gene
SwissProt Q9XU52 EMBL-EBI
WormBase CE18937 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05795 Hypothetical protein T08G3.5 [Caenorhabditis elegans] ref|NP_507159.1| Serpentine Receptor, class H family member (srh-141) [Caenorhabditis elegans] 0.0
blast CAB05794 Hypothetical protein T08G3.3 [Caenorhabditis elegans] ref|NP_507163.1| Serpentine Receptor, class H family member (srh-142) [Caenorhabditis elegans] 1.0E-110
blast CAB04175 Hypothetical protein F26D2.4 [Caenorhabditis elegans] ref|NP_507147.1| Serpentine Receptor, class H family member (srh-145) [Caenorhabditis elegans] 2.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507159.1 7 15-37,58-80,95-117,138-157,196-218,239-261,274-296
T08G3.5 7 15-37,58-80,95-117,138-157,196-218,239-261,274-296
Sequence
Target Sequence 
>C. ELEGANS:179310_AT
gagcagtctattactcaattctctacatagcatcgatttcaacttttataactccattga
tgaaagttccaaatgtcaccaaaacccgtgccattgcccgtctaaaatatccatgtcttc
ctcgggaaatagtaaataacccgagattatttgtgttagcctgtgccaacactgtcatca
tatgttttttcaccttcctattcatcggatggatccaagtcgtgggcttcttcttggcta
ccgccattaatattcacaagggaaaaactctatcaaagaaggcttcacaaatgcagaagc
agtttttcatagcactatgtatccaattttcagtgcccctaattgttgtattaatccctg
aatcatatttgatatactctgctgtgactaaaaatttggatattgcattgacgaatatct
ctatgatctgcttctcaactcacgggctattttcgacaattgtgatgcttgtggtgcata
agccttatcgtcaagctactttgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAGTCTATTACTCAATTCTCTA 561 389 425 Antisense
CAAATGTCACCAAAACCCGTGCCAT 395 193 494 Antisense
TGCCATTGCCCGTCTAAAATATCCA 9 587 513 Antisense
CTGTGCCAACACTGTCATCATATGT 184 241 585 Antisense
TTTTTTCACCTTCCTATTCATCGGA 647 675 609 Antisense
GATGGATCCAAGTCGTGGGCTTCTT 608 407 632 Antisense
TGGCTACCGCCATTAATATTCACAA 501 545 659 Antisense
TATGTATCCAATTTTCAGTGCCCCT 511 655 740 Antisense
ATCTCTATGATCTGCTTCTCAACTC 231 33 841 Antisense
CTCAACTCACGGGCTATTTTCGACA 38 229 858 Antisense
GCCTTATCGTCAAGCTACTTTGCAA 585 281 906 Antisense
Sequence Source Affymetrix Proprietary Database