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[179309_at]

Description C02C6.2 /REP_DB=WormBase Gene ID /WP=CE23514 /TR=Q93174 /GB=CAB01856.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 17      4grp_highest_8_8 > 52      4grp_high_8_8 > 17      6grp_highest_nonorm > 70      6grp_total > 16      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 591
1 2 3 4 range
A 632
(3)
P 		205.9
(-2.2)
P 		138.7
(-3)
P 		433.3
(0.6)
P 		493
B 724.6
(3)
P 		175.8
(-2.6)
P 		133.9
(-3)
P 		398
(-0.3)
P 		591
C 541.4
(3)
P 		190.3
(-2.3)
P 		144.8
(-3)
P 		313.5
(-0.4)
P 		397
avr 632.7
(3) 		190.7
(-2.4) 		139.1
(-3) 		381.6
(-0.1) 		494

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 443
1 2 3 4 5 6 range
A 553.3
(3)
P 		335.3
(-0.3)
P 		152.1
(-3)
P 		160.5
(-2.9)
P 		168.4
(-2.8)
P 		188
(-2.5)
P 		401
B 595
(3)
P 		390.5
(0)
P 		185.8
(-3)
P 		226.7
(-2.4)
P 		246.6
(-2.1)
P 		259.7
(-1.9)
P 		409
C 552.2
(3)
P 		457.4
(1.5)
P 		206.9
(-2.4)
P 		256.9
(-1.6)
P 		167.8
(-3)
P 		225.1
(-2.1)
P 		384
avr 566.8
(3) 		394.4
(0.3) 		181.6
(-3) 		214.7
(-2.5) 		194.3
(-2.8) 		224.3
(-2.3) 		385
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 230.1
(3)
P 		44.7
(-2.7)
P 		36.3
(-3)
P 		63.4
(-2.2)
P 		194
B 231.1
(3)
P 		43.4
(-2.6)
P 		31
(-3)
P 		84.8
(-1.4)
P 		200
C 179.2
(3)
P 		54.7
(-2.8)
P 		50.5
(-3)
P 		52.9
(-2.9)
P 		129
avr 213.5
(3) 		47.6
(-2.7) 		39.3
(-3) 		67
(-2) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 102
(1.8)
P 		119.3
(3)
P 		33.1
(-3)
P 		40.7
(-2.5)
P 		50.8
(-1.8)
P 		45.8
(-2.1)
P 		86
B 207
(3)
P 		130
(0.1)
P 		45.1
(-3)
P 		60.1
(-2.4)
P 		100.2
(-1)
P 		96.8
(-1.1)
P 		162
C 204.7
(3)
P 		139.6
(0.4)
P 		52.7
(-3)
P 		51.7
(-3)
P 		54.3
(-2.9)
P 		75.4
(-2.1)
P 		153
avr 171.2
(3) 		129.6
(1) 		43.6
(-3) 		50.8
(-2.7) 		68.4
(-1.8) 		72.7
(-1.6) 		128
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179309_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17342
Sequence Type Exemplar sequence
Representative Public ID C02C6.2 NCBI
Target Description C02C6.2 /REP_DB=WormBase Gene ID /WP=CE23514 /TR=Q93174 /GB=CAB01856.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029162(11), NM_001029163(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029162 NCBI Caenorhabditis elegans C02C6.2a (C02C6.2) mRNA, complete cds. 11/11 None
NM_001029163 NCBI Caenorhabditis elegans C02C6.2b (C02C6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000042398 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15542365:15545944:1 11/11 None
SNAP00000042394 ENSEMBL cdna:SNAP chromosome:CEL140:X:15542985:15545944:1 11/11 None
C02C6.2 ENSEMBL cdna:known chromosome:CEL140:X:15542929:15546578:1 gene:C02C6.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15542984-15545944(+) 100.0 100.0
Public Domain and Genome References
Ensembl C02C6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79132 Hypothetical protein C02C6.2a [Caenorhabditis elegans] ref|NP_001024333.1| C02C6.2a [Caenorhabditis elegans] 0.0
blast CAB01856 Hypothetical protein C02C6.2b [Caenorhabditis elegans] ref|NP_001024334.1| C02C6.2b [Caenorhabditis elegans] 0.0
blast CAE63326 Hypothetical protein CBG07722 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024333.1 2 290-312,460-482
NP_001024334.1 3 264-281,285-307,453-475
C02C6.2 3 264-281,285-307,453-475
GENEFINDER00000042398 2 337-359,510-532
SNAP00000042394 3 264-281,285-307,453-475
Sequence
Target Sequence 
>C. ELEGANS:179309_AT
ttcgagaagttcttcccggacgacagtggtgcatcaagcttcattgtgccaagctccttt
cttccaaaacaacatgaaaccaaagttaacattgactgctccgttgttgagttgtgctca
agctctccggatgataacagttgggtccaagaactagcagcacctactttagacgggaag
ggtactccttattcctacgtcttagctactccaaattttcaactggacaatcgcatgaat
tgcctgcgaacctggttccatcaccataagaagttcttctactacattccgtcaacaaca
accttcctctcaggaatggtcgagatcgcatacattcttggccacacaaactgggaaggc
actgtctgcgtgccggcaacatctcaaattttggagggtcctgacgatatgacagctgat
gaaaaagaccatgccagagccgccagacggcgtcgcaacgattgttatcaaatcgctttt
tgttatctcaaggatatggcgaaacgtcgtcaatgccgtgtattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGAGAAGTTCTTCCCGGACGACA 50 643 1096 Antisense
GGTGCATCAAGCTTCATTGTGCCAA 510 501 1123 Antisense
CAAGCTCCTTTCTTCCAAAACAACA 183 187 1145 Antisense
GACTGCTCCGTTGTTGAGTTGTGCT 549 375 1189 Antisense
GAACTAGCAGCACCTACTTTAGACG 306 343 1246 Antisense
TTCCTACGTCTTAGCTACTCCAAAT 530 697 1287 Antisense
TTGCCTGCGAACCTGGTTCCATCAC 469 701 1335 Antisense
TTCTTCTACTACATTCCGTCAACAA 594 687 1369 Antisense
CGAGATCGCATACATTCTTGGCCAC 657 249 1416 Antisense
GCCAGACGGCGTCGCAACGATTGTT 13 281 1537 Antisense
GAAACGTCGTCAATGCCGTGTATTC 467 355 1596 Antisense
Sequence Source Affymetrix Proprietary Database