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[179308_s_at]

Description T06D8.3 /REP_DB=WormBase Gene ID /WP=CE02324 /TR=Q22250 /GB=CAA88966.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 50      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 609
1 2 3 4 range
A 81.2
(-2.6)
A 		532.1
(3)
P 		477.5
(2.3)
P 		49.9
(-3)
A 		482
B 97.3
(-2.7)
A 		636.1
(3)
P 		415.5
(0.7)
P 		65.3
(-3)
A 		571
C 77.1
(-2.4)
A 		525.1
(3)
P 		360.6
(1)
P 		27.4
(-3)
A 		498
avr 85.2
(-2.6) 		564.4
(3) 		417.9
(1.3) 		47.5
(-3) 		517

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 277.4
(3)
A 		248
(1.3)
P 		187.5
(-2.1)
A 		170.7
(-3)
A 		200.3
(-1.3)
A 		213.1
(-0.6)
A 		107
B 271.8
(1.7)
M 		313.4
(3)
P 		156.8
(-1.8)
A 		154.3
(-1.9)
A 		192.6
(-0.7)
A 		116.6
(-3)
P 		197
C 307.6
(2.5)
P 		324.2
(3)
P 		185
(-1.5)
A 		151.8
(-2.6)
A 		235.4
(0.1)
P 		140
(-3)
P 		184
avr 285.6
(2.6) 		295.2
(3) 		176.4
(-2.1) 		158.9
(-2.9) 		209.4
(-0.7) 		156.6
(-3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 29.6
(-1.9)
A 		115.5
(2.5)
P 		124.8
(3)
P 		7.3
(-3)
A 		118
B 31
(-2.3)
A 		157.1
(3)
P 		96.3
(0.5)
P 		13.9
(-3)
A 		143
C 25.5
(-2.1)
A 		151
(3)
P 		125.7
(2)
P 		4.6
(-3)
A 		146
avr 28.7
(-2.1) 		141.2
(3) 		115.6
(1.8) 		8.6
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 51.1
(-1.7)
A 		88.2
(3)
P 		40.8
(-3)
A 		43.3
(-2.7)
A 		60.4
(-0.5)
A 		51.9
(-1.6)
A 		47
B 94.6
(2.1)
M 		104.3
(3)
P 		38.1
(-3)
A 		40.9
(-2.7)
A 		78.2
(0.6)
A 		43.5
(-2.5)
P 		66
C 114
(3)
P 		98.9
(1.9)
P 		47.1
(-1.8)
A 		30.5
(-3)
A 		76.2
(0.3)
P 		46.9
(-1.8)
P 		84
avr 86.6
(1.9) 		97.1
(3) 		42
(-2.6) 		38.2
(-3) 		71.6
(0.4) 		47.4
(-2.1) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179308_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3847
Sequence Type Exemplar sequence
Representative Public ID T06D8.3 NCBI
Target Description T06D8.3 /REP_DB=WormBase Gene ID /WP=CE02324 /TR=Q22250 /GB=CAA88966.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063998(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063998 NCBI Caenorhabditis elegans T06D8.3 (T06D8.3) mRNA, complete cds. 11/11 None
SNAP00000001107 ENSEMBL cdna:SNAP chromosome:CEL140:II:11222257:11226149:1 11/11 None
GENEFINDER00000001121 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11222257:11226149:1 11/11 None
T06D8.3 ENSEMBL cdna:known chromosome:CEL140:II:11222218:11226426:1 gene:T06D8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11222253-11226146(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06D8.3
Entrez Gene 174710 Entrez gene
SwissProt Q22250 EMBL-EBI
WormBase CE02324 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605327_AT similar to plasticity-related protein 3 cfa
CANINE_2:CFA.363.2.S1_AT similar to plasticity-related protein 3 cfa
CANINE_2:CFA.363.3.S1_A_AT similar to plasticity-related protein 3 cfa
CANINE_2:CFAAFFX.30692.1.S1_S_AT similar to plasticity-related protein 3 cfa
CHICKEN:GGA.12079.2.S1_A_AT similar to plasticity related gene 3; lipid phosphate phosphatase-related protein type 1 gga
HG-U133_PLUS_2:231397_AT hypothetical protein LOC163404 hs
HG-U133B:231397_AT hypothetical protein LOC163404 hs
HU35KSUBB:RC_F10143_AT hypothetical protein LOC163404 hs
U133_X3P:HS.312481.0.A1_3P_AT hypothetical protein LOC163404 hs
U133_X3P:HS.13226.0.S1_3P_AT hypothetical protein LOC163404 hs
HG-U133_PLUS_2:242825_AT hypothetical protein LOC163404 hs
HG-U133B:242825_AT hypothetical protein LOC163404 hs
HG-U95C:61919_AT hypothetical protein LOC163404 hs
HU35KSUBC:RC_AA012911_AT Hypothetical protein LOC163404 hs
MG-U74BV2:106466_AT RIKEN cDNA 4833424O15 gene mm
MG-U74CV2:136773_F_AT RIKEN cDNA 4833424O15 gene mm
MG-U74CV2:167637_I_AT RIKEN cDNA 4833424O15 gene mm
MOE430B:1429249_AT RIKEN cDNA 4833424O15 gene mm
MOUSE430_2:1429249_AT RIKEN cDNA 4833424O15 gene mm
MOE430B:1434925_AT RIKEN cDNA 4833424O15 gene mm
MOUSE430_2:1434925_AT RIKEN cDNA 4833424O15 gene mm
MOE430B:1438344_AT RIKEN cDNA 4833424O15 gene mm
MOUSE430_2:1438344_AT RIKEN cDNA 4833424O15 gene mm
RAE230B:1394966_AT similar to hypothetical protein FLJ20300 (predicted) rn
RAT230_2:1394966_AT similar to hypothetical protein FLJ20300 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA88966 Hypothetical protein T06D8.3 [Caenorhabditis elegans] ref|NP_496399.1| T06D8.3 [Caenorhabditis elegans] 0.0
blast CAE59551 Hypothetical protein CBG02947 [Caenorhabditis briggsae] 0.0
blast CAF89702 unnamed protein product [Tetraodon nigroviridis] 2.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR000326 EMBL-EBI PA-phosphatase related phosphoesterase 3.6E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496399.1 6 36-58,97-119,146-168,217-239,246-268,278-300
T06D8.3 6 36-58,97-119,146-168,217-239,246-268,278-300
SNAP00000001107 6 36-58,97-119,146-168,217-239,246-268,278-300
GENEFINDER00000001121 6 36-58,97-119,146-168,217-239,246-268,278-300
Sequence
Target Sequence 
>C. ELEGANS:179308_S_AT
ccactagagcattcaccatctccatcccctcatttggcctgcaattacagaggagctgat
gagcttcgttacgcatggctcacgttcccatcccttcatgccgtcgtctcatcgtacgcc
gcttgctttgcatctctctacatctactacatgattaacttgcgtggagccccacttctc
cgcccactccttatcttcggattcatgggactctgcatcgtcgactcgttctcccgtatc
aacggatacaaaaaccattggcgtgacatctgggtcgcatgggtcatcggaatcttcatg
gcttggttcttgtgctactgcgtcctgtgcttccaagaagtctaccatatgactatcgaa
cgtacgccgattgttcaagaggagcgcgtctcgccgttcttcagttggtttagacttcca
cgtgttcaggctccgtcggtgaaggaggaatatgtcgtctacgaggaagacgtggagcgg
ccgaacggcacactgcgaaaccgtcataaccaaggaaatcgtcaatacgaggtgacgaca
acaacggaatccttccatagaaccatcagtccacaacagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACTAGAGCATTCACCATCTCCAT 680 273 577 Antisense
CCACTCCTTATCTTCGGATTCATGG 279 275 760 Antisense
GATTCATGGGACTCTGCATCGTCGA 267 431 776 Antisense
ACTCGTTCTCCCGTATCAACGGATA 251 99 800 Antisense
ATTGGCGTGACATCTGGGTCGCATG 386 3 833 Antisense
TGGGTCATCGGAATCTTCATGGCTT 655 553 856 Antisense
TGCGTCCTGTGCTTCCAAGAAGTCT 495 583 895 Antisense
TTGTTCAAGAGGAGCGCGTCTCGCC 685 675 947 Antisense
GTTGGTTTAGACTTCCACGTGTTCA 62 437 980 Antisense
GCACACTGCGAAACCGTCATAACCA 454 315 1064 Antisense
ATAGAACCATCAGTCCACAACAGCA 39 21 1133 Antisense
Sequence Source Affymetrix Proprietary Database