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[179307_at]

Description F45H7.1 /REP_DB=WormBase Gene ID /WP=CE01005 /TR=Q20441 /GB=CAA84321.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 11      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 33
(-1.1)
A 		40.6
(0.2)
A 		22.2
(-3)
A 		56.5
(3)
A 		34
B 31.2
(-1.8)
A 		18.2
(-3)
A 		20.3
(-2.8)
A 		81.1
(3)
A 		63
C 14.8
(-3)
A 		42.7
(-0.4)
A 		16.6
(-2.8)
A 		78.6
(3)
A 		64
avr 26.3
(-2.2) 		33.8
(-1.4) 		19.7
(-3) 		72.1
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 15.3
(-1.7)
A 		28.1
(-0.3)
A 		57.5
(3)
A 		3.9
(-3)
A 		14.5
(-1.8)
A 		39.9
(1)
A 		54
B 51.9
(3)
A 		29.3
(0.2)
A 		4.3
(-3)
A 		9.6
(-2.3)
A 		18.1
(-1.3)
A 		16.8
(-1.4)
A 		48
C 12.3
(-2.4)
A 		14.2
(-2.2)
A 		62.8
(3)
A 		7
(-3)
A 		14.2
(-2.2)
A 		53
(1.9)
A 		56
avr 26.5
(0.4) 		23.9
(-0) 		41.5
(3) 		6.8
(-3) 		15.6
(-1.5) 		36.6
(2.2) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 12
(3)
A 		8.8
(-0.1)
A 		5.8
(-3)
A 		8.3
(-0.6)
A 		6
B 10
(-0.4)
A 		4.5
(-3)
A 		4.7
(-2.9)
A 		17.3
(3)
A 		13
C 4.9
(-3)
A 		12.3
(2.3)
A 		5.8
(-2.4)
A 		13.3
(3)
A 		8
avr 9
(-0.2) 		8.5
(-0.6) 		5.4
(-3) 		13
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.8
(-2.1)
A 		10
(1.7)
A 		12.5
(3)
A 		1
(-3)
A 		4.4
(-1.2)
A 		9.7
(1.5)
A 		12
B 18.1
(3)
A 		9.7
(0.1)
A 		1
(-3)
A 		2.6
(-2.4)
A 		7.3
(-0.8)
A 		6.3
(-1.1)
A 		17
C 4.5
(-1.9)
A 		4.3
(-1.9)
A 		16
(2.4)
A 		1.4
(-3)
A 		4.6
(-1.8)
A 		17.7
(3)
A 		16
avr 8.5
(1.3) 		8
(1) 		9.8
(2.1) 		1.7
(-3) 		5.4
(-0.7) 		11.2
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179307_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5994
Sequence Type Exemplar sequence
Representative Public ID F45H7.1 NCBI
Target Description F45H7.1 /REP_DB=WormBase Gene ID /WP=CE01005 /TR=Q20441 /GB=CAA84321.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065292(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065292 NCBI Caenorhabditis elegans F45H7.1 (F45H7.1) mRNA, complete cds. 11/11 None
GENEFINDER00000042115 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3344865:3362991:1 11/11 None
SNAP00000042110 ENSEMBL cdna:SNAP chromosome:CEL140:III:3346496:3348482:1 11/11 None
F45H7.1 ENSEMBL cdna:known chromosome:CEL140:III:3344865:3348180:1 gene:F45H7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3344864-3348180(+) 96.03 100.0
Public Domain and Genome References
Gene Title
Ensembl F45H7.1
Entrez Gene 185816 Entrez gene
SwissProt Q20441 EMBL-EBI
WormBase CE28934 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84321 Hypothetical protein F45H7.1 [Caenorhabditis elegans] ref|NP_497693.1| F45H7.1 [Caenorhabditis elegans] 0.0
blast CAA84322 Hypothetical protein F45H7.2b [Caenorhabditis elegans] ref|NP_497695.2| GEX Interacting protein family member (gei-1) [Caenorhabditis elegans] 0.0
blast CAA84324 Hypothetical protein F45H7.2a [Caenorhabditis elegans] ref|NP_497694.2| GEX Interacting protein family member (gei-1) [Caenorhabditis elegans] 0.0
blast CAE65017 Hypothetical protein CBG09855 [Caenorhabditis briggsae] 0.0
blast CAA84321 Hypothetical protein F45H7.1 [Caenorhabditis elegans] ref|NP_497693.1| F45H7.1 [Caenorhabditis elegans] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR002913 EMBL-EBI Lipid-binding START 2.3E-6
Pfam IPR000198 EMBL-EBI RhoGAP domain 2.4E-56
Sequence
Target Sequence 
>C. ELEGANS:179307_AT
atcaccgtgctccgaatcgaattactcggatcgattagccacttcggacacagcaacaac
gcaaaaagcgtctcgagcttcttcattcgaatggctggaaaattcgggtcacgggaaata
tgaacaatgttcatctgatgaagctgatcgagaagttgcttcaattgaaatggtcaaaca
gacagaagtgttgcagaggaaaaaaactatcgaggacctcgaagagagtgtgaatgagct
tcagagcctgggcaatggatcatggtttccacatccaccgccaccaccagctgaggccag
ggatcagatttacgagtctttgccggcttcatttcgaaatcgcaagtcagaaaatcgaaa
gaatgcggttggaagtgtgtatgacaatgcggccatcagcagcaaaccatcatcttccga
aacaacgtcattttcacaacaaaaaccaatcattgatagaaaaccattttctctcgagaa
tctcccgatggtacagcggctcaccgagttgagtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACCGTGCTCCGAATCGAATTAC 46 29 714 Antisense
GATTAGCCACTTCGGACACAGCAAC 72 431 746 Antisense
AAAAGCGTCTCGAGCTTCTTCATTC 555 131 777 Antisense
GAATGAGCTTCAGAGCCTGGGCAAT 318 331 945 Antisense
ATGGATCATGGTTTCCACATCCACC 703 51 968 Antisense
ACCACCAGCTGAGGCCAGGGATCAG 658 85 996 Antisense
TCAGATTTACGAGTCTTTGCCGGCT 216 623 1017 Antisense
TTTGCCGGCTTCATTTCGAAATCGC 614 667 1032 Antisense
AATGCGGCCATCAGCAGCAAACCAT 493 165 1099 Antisense
AGAATCTCCCGATGGTACAGCGGCT 143 73 1190 Antisense
TACAGCGGCTCACCGAGTTGAGTGC 708 633 1205 Antisense
Sequence Source Affymetrix Proprietary Database