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[179306_at]

Description F32D8.8 /REP_DB=WormBase Gene ID /WP=CE05787 /TR=Q19960 /GB=CAA98451.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 26.2
(-0.8)
A 		2.6
(-3)
A 		16.5
(-1.7)
A 		65.6
(3)
A 		63
B 35.9
(2.1)
P 		6.2
(-2.8)
A 		5.1
(-3)
A 		41.6
(3)
A 		37
C 32.6
(-0.8)
A 		20.1
(-2.3)
A 		13.9
(-3)
A 		64.3
(3)
P 		50
avr 31.6
(-0.2) 		9.6
(-3) 		11.8
(-2.7) 		57.2
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 49.4
(-2)
A 		15
(-2.9)
A 		50.2
(-1.9)
P 		172.3
(1.5)
P 		227.1
(3)
P 		11.8
(-3)
A 		215
B 11
(-3)
A 		37.1
(-2.3)
A 		27.4
(-2.5)
A 		168.2
(1.5)
P 		221.5
(3)
P 		19.5
(-2.8)
P 		211
C 23.8
(-3)
A 		33.4
(-2.7)
P 		43.9
(-2.4)
A 		215.7
(3)
P 		175.6
(1.7)
P 		35.6
(-2.6)
P 		192
avr 28.1
(-2.8) 		28.5
(-2.8) 		40.5
(-2.4) 		185.4
(2.3) 		208.1
(3) 		22.3
(-3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9.5
(2.9)
A 		0.6
(-3)
A 		4.3
(-0.5)
A 		9.6
(3)
A 		9
B 11.5
(3)
P 		1.5
(-2.8)
A 		1.2
(-3)
A 		8.9
(1.5)
A 		10
C 10.8
(3)
A 		5.8
(-2.1)
A 		4.9
(-3)
A 		10.8
(3)
P 		6
avr 10.6
(3) 		2.6
(-3) 		3.5
(-2.3) 		9.8
(2.4) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 9.1
(-2.4)
A 		5.3
(-2.8)
A 		10.9
(-2.3)
P 		43.7
(0.7)
P 		68.5
(3)
P 		2.9
(-3)
A 		66
B 3.8
(-3)
A 		12.3
(-2.4)
A 		6.7
(-2.8)
A 		44.5
(-0.2)
P 		90
(3)
P 		7.3
(-2.8)
P 		86
C 8.8
(-3)
A 		10.2
(-2.8)
P 		11.2
(-2.7)
A 		43.4
(1.3)
P 		56.8
(3)
P 		11.9
(-2.6)
P 		48
avr 7.2
(-3) 		9.3
(-2.8) 		9.6
(-2.8) 		43.9
(0.4) 		71.8
(3) 		7.4
(-3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179306_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13158
Sequence Type Exemplar sequence
Representative Public ID F32D8.8 NCBI
Target Description F32D8.8 /REP_DB=WormBase Gene ID /WP=CE05787 /TR=Q19960 /GB=CAA98451.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073380 NCBI Caenorhabditis elegans F32D8.8 (F32D8.8) mRNA, complete cds. 11/11 None
SNAP00000041035 ENSEMBL cdna:SNAP chromosome:CEL140:V:10904067:10905369:-1 11/11 None
GENEFINDER00000041048 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10904067:10905369:-1 11/11 None
F32D8.8 ENSEMBL cdna:known chromosome:CEL140:V:10904067:10905369:-1 gene:F32D8.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10904066-10905369(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32D8.8
Entrez Gene 185206 Entrez gene
SwissProt Q19960 EMBL-EBI
WormBase CE05787 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98451 Hypothetical protein F32D8.8 [Caenorhabditis elegans] ref|NP_505781.1| F32D8.8 [Caenorhabditis elegans] 0.0
blast CAB07296 Hypothetical protein W08G11.1 [Caenorhabditis elegans] ref|NP_507132.1| W08G11.1 [Caenorhabditis elegans] pir||T26291 hypothetical protein W08G11.1 - Caenorhabditis elegans 3.0E-67
blast CAE71910 Hypothetical protein CBG18972 [Caenorhabditis briggsae] 2.0E-66
blast CAB07296 Hypothetical protein W08G11.1 [Caenorhabditis elegans] ref|NP_507132.1| W08G11.1 [Caenorhabditis elegans] pir||T26291 hypothetical protein W08G11.1 - Caenorhabditis elegans 3.0E-66
Protein Domains
Database ID Description E-Value
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 1.0E-126
Pfam IPR004951 EMBL-EBI Caenorhabditis protein of unknown function DUF268 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505781.1 1 7-26
F32D8.8 1 7-26
SNAP00000041035 1 7-26
GENEFINDER00000041048 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:179306_AT
tggagtttcactacattatgcaatgaaacaacatgaattaaacgataaaaacggtgtaat
tgttggaagcttgataccatgggtcgaggtgctttctttacaacatggagcaagtaatat
tttgacaattgagcacaacaagttagacattgaagaacgattcagagatcgagtttattc
aataacacctgttgaatttgcgatgaatttcaaaaattattccgagagttttgattttgc
agcggcattttcatcaatagaatatattggattaggtcaatatggtgaaccaattgatcc
atatggagatttaagagaaattcaaaaaatacgatgtgccttgaaacctggaggtttact
gtttttggggctaccatttggacttgatgcagtgatattcaacactcatagagtttatgg
accaatacgacttgcaatgttaatgactggatttgactggattgctacatactcttcaga
gacaacattatccatttcgttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGTTTCACTACATTATGCAATG 478 549 561 Antisense
GAAGCTTGATACCATGGGTCGAGGT 158 337 626 Antisense
GTCGAGGTGCTTTCTTTACAACATG 661 473 643 Antisense
ATAACACCTGTTGAATTTGCGATGA 423 25 742 Antisense
TTTGCAGCGGCATTTTCATCAATAG 667 667 796 Antisense
ATACGATGTGCCTTGAAACCTGGAG 137 23 889 Antisense
GGGGCTACCATTTGGACTTGATGCA 118 499 927 Antisense
ATGGACCAATACGACTTGCAATGTT 200 53 977 Antisense
TGACTGGATTTGACTGGATTGCTAC 487 569 1004 Antisense
GGATTGCTACATACTCTTCAGAGAC 369 509 1019 Antisense
GAGACAACATTATCCATTTCGTTAA 329 393 1039 Antisense
Sequence Source Affymetrix Proprietary Database