[Home] | [Total List]

[179303_at]

Description T09F5.6 /REP_DB=WormBase Gene ID /WP=CE13531 /TR=O18072 /GB=CAB05804.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 28      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 41.9
(3)
A 		12.1
(-3)
A 		16.3
(-2.2)
A 		34.4
(1.5)
A 		30
B 32.8
(-1.9)
A 		55.3
(3)
A 		32.3
(-2)
A 		27.8
(-3)
A 		28
C 20.8
(-1.7)
A 		30
(-0.6)
A 		9.7
(-3)
A 		61.3
(3)
A 		52
avr 31.8
(0.4) 		32.5
(0.6) 		19.4
(-3) 		41.2
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 20.2
(-1.8)
A 		17.9
(-2.1)
A 		57.3
(3)
A 		13
(-2.7)
A 		27.4
(-0.9)
A 		10.9
(-3)
A 		46
B 35.7
(1.1)
A 		32.7
(0.7)
A 		40.1
(1.8)
A 		8.9
(-3)
A 		37.4
(1.4)
A 		47.9
(3)
A 		39
C 15.2
(-3)
A 		23.8
(-1.8)
A 		29.7
(-1)
A 		58.3
(3)
A 		15.6
(-2.9)
A 		46.9
(1.4)
P 		43
avr 23.7
(-3) 		24.8
(-2.6) 		42.4
(3) 		26.7
(-2) 		26.8
(-2) 		35.2
(0.7) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 15.3
(3)
A 		2.6
(-3)
A 		4.3
(-2.2)
A 		5
(-1.9)
A 		13
B 10.5
(0.5)
A 		13.7
(3)
A 		7.5
(-1.8)
A 		5.9
(-3)
A 		8
C 6.9
(0)
A 		8.6
(1.5)
A 		3.4
(-3)
A 		10.3
(3)
A 		7
avr 10.9
(3) 		8.3
(0.3) 		5.1
(-3) 		7.1
(-0.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.7
(-2.4)
A 		6.4
(-0.7)
A 		12.5
(3)
A 		3.3
(-2.6)
A 		8.3
(0.4)
A 		2.7
(-3)
A 		10
B 12.4
(0.9)
A 		10.9
(0.3)
A 		9.7
(-0.2)
A 		2.4
(-3)
A 		15.2
(2)
A 		17.9
(3)
A 		16
C 5.6
(-2.7)
A 		7.3
(-1.7)
A 		7.6
(-1.5)
A 		11.7
(0.8)
A 		5
(-3)
A 		15.7
(3)
P 		11
avr 7.2
(-1.7) 		8.2
(-0.7) 		9.9
(0.9) 		5.8
(-3) 		9.5
(0.5) 		12.1
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179303_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14783
Sequence Type Exemplar sequence
Representative Public ID T09F5.6 NCBI
Target Description T09F5.6 /REP_DB=WormBase Gene ID /WP=CE13531 /TR=O18072 /GB=CAB05804.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000036438 ENSEMBL cdna:SNAP chromosome:CEL140:V:15157998:15159041:1 11/11 None
GENEFINDER00000036448 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15155482:15159041:1 11/11 None
T09F5.6 ENSEMBL cdna:pseudogene chromosome:CEL140:V:15157725:15159041:1 gene:T09F5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15157724-15159041(+) 100.0 100.0
Public Domain and Genome References
Ensembl T09F5.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05806 Hypothetical protein T09F5.5 [Caenorhabditis elegans] ref|NP_506739.2| Serpentine Receptor, class H family member (srh-55) [Caenorhabditis elegans] 1.0E-121
blast T24759 hypothetical protein T09F5.6 - Caenorhabditis elegans 1.0E-93
blast T24759 hypothetical protein T09F5.6 - Caenorhabditis elegans 3.0E-92
blast CAB05806 Hypothetical protein T09F5.5 [Caenorhabditis elegans] ref|NP_506739.2| Serpentine Receptor, class H family member (srh-55) [Caenorhabditis elegans] 1.0E-78
blast CAB04633 Hypothetical protein R08H2.7 [Caenorhabditis elegans] ref|NP_506816.1| Serpentine Receptor, class H family member (srh-52) [Caenorhabditis elegans] 2.0E-66
blast CAB04633 Hypothetical protein R08H2.7 [Caenorhabditis elegans] ref|NP_506816.1| Serpentine Receptor, class H family member (srh-52) [Caenorhabditis elegans] 1.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.9E-71
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.5E-37
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.4E-117
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.0E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000036438 5 4-25,32-51,87-109,136-158,173-192
GENEFINDER00000036448 10 45-67,82-104,125-147,162-184,204-223,263-285,306-328,386-408,435-457,472-491
Sequence
Target Sequence 
>C. ELEGANS:179303_AT
atgtggtgcgattttgcctccatattttgaaacatttgatatgcaagaaatggctctgga
ggctttgaaggtagttccttgtccagtcaaagaattcttcgatccacgcttgcaacttgt
cactaacaaacctttactaatgacgtccctaatgggtcttcaatgtattgttctatttcc
ccagggaggtttctacttgttcaatacatggtatcatcttgtttattcctatagttcaca
agtatctgcacaaacccgaaaattacaactgaagttccttttatgctccctattgcaaat
tactgttccacttatggtatttatgaatccaattctttacatttggttctccattaatat
tggatattataatcaagaagctaataatcatctatctgttgctgtatcttttcacggatt
actgggttccagttgtatgcttcttgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGGTGCGATTTTGCCTCCATAT 392 49 147 Antisense
GGTAGTTCCTTGTCCAGTCAAAGAA 278 503 216 Antisense
CACGCTTGCAACTTGTCACTAACAA 392 199 251 Antisense
ATGACGTCCCTAATGGGTCTTCAAT 428 45 286 Antisense
CAATGTATTGTTCTATTTCCCCAGG 459 183 307 Antisense
GGGAGGTTTCTACTTGTTCAATACA 462 495 330 Antisense
AACTGAAGTTCCTTTTATGCTCCCT 40 141 413 Antisense
GCTCCCTATTGCAAATTACTGTTCC 371 299 431 Antisense
AATTCTTTACATTTGGTTCTCCATT 291 177 477 Antisense
ATCTGTTGCTGTATCTTTTCACGGA 592 33 540 Antisense
GTTCCAGTTGTATGCTTCTTGTTCA 449 441 572 Antisense
Sequence Source Affymetrix Proprietary Database