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[179302_at]

Description F22B8.7 /REP_DB=WormBase Gene ID /WP=CE15885 /TR=O45394 /GB=CAB05497.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 20      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 14      6grp_total > 41      4grp_total > 23      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 933
1 2 3 4 range
A 1452.7
(1.7)
P 		802.6
(-2.7)
P 		764
(-3)
P 		1635.1
(3)
P 		871
B 1670.6
(3)
P 		737.5
(-3)
P 		802.6
(-2.6)
P 		1383.1
(1.2)
P 		933
C 1630.4
(3)
P 		740.3
(-3)
P 		765
(-2.8)
P 		1270.2
(0.6)
P 		890
avr 1584.6
(3) 		760.1
(-3) 		777.2
(-2.9) 		1429.5
(1.9) 		825

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1997
1 2 3 4 5 6 range
A 4451.2
(3)
P 		4210.1
(2)
P 		4169.3
(1.9)
P 		3897.3
(0.8)
P 		2949.8
(-3)
P 		3263.3
(-1.7)
P 		1501
B 3983.4
(3)
P 		3777
(1.6)
P 		3844.7
(2.1)
P 		3892.6
(2.4)
P 		3324.7
(-1.4)
P 		3087.6
(-3)
P 		896
C 3653.7
(0.7)
P 		4001.7
(1.8)
P 		4358.7
(2.9)
P 		4386.7
(3)
P 		2454.7
(-3)
P 		2810.7
(-1.9)
P 		1932
avr 4029.4
(2.5) 		3996.3
(2.4) 		4124.2
(3) 		4058.9
(2.7) 		2909.7
(-3) 		3053.9
(-2.3) 		1215
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 528.9
(3)
P 		174.2
(-3)
P 		199.7
(-2.6)
P 		239.3
(-1.9)
P 		355
B 532.7
(3)
P 		182.2
(-3)
P 		186
(-2.9)
P 		294.7
(-1.1)
P 		351
C 539.7
(3)
P 		212.8
(-3)
P 		266.6
(-2)
P 		214.2
(-3)
P 		327
avr 533.8
(3) 		189.7
(-3) 		217.4
(-2.5) 		249.4
(-2) 		344

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 703
1 2 3 4 5 6 range
A 820.6
(-2.8)
P 		1497.3
(3)
P 		908
(-2)
P 		988.4
(-1.3)
P 		890.1
(-2.2)
P 		794.5
(-3)
P 		703
B 1386
(3)
P 		1257.2
(1.3)
P 		933.6
(-3)
P 		1031
(-1.7)
P 		1350.8
(2.5)
P 		1151.4
(-0.1)
P 		452
C 1354.3
(3)
P 		1221
(1.6)
P 		1109.4
(0.4)
P 		882.2
(-2.1)
P 		794.3
(-3)
P 		940.9
(-1.4)
P 		560
avr 1187
(0.7) 		1325.2
(3) 		983.7
(-2.6) 		967.2
(-2.9) 		1011.7
(-2.2) 		962.3
(-3) 		363
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179302_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14075
Sequence Type Exemplar sequence
Representative Public ID F22B8.7 NCBI
Target Description F22B8.7 /REP_DB=WormBase Gene ID /WP=CE15885 /TR=O45394 /GB=CAB05497.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074650(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074650 NCBI Caenorhabditis elegans F22B8.7 (F22B8.7) mRNA, complete cds. 11/11 None
SNAP00000002256 ENSEMBL cdna:SNAP chromosome:CEL140:V:16097824:16099849:1 11/11 None
GENEFINDER00000002261 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16093568:16099849:1 11/11 None
F22B8.7 ENSEMBL cdna:known chromosome:CEL140:V:16097807:16099883:1 gene:F22B8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16096828-16099849(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22B8.7
Entrez Gene 180078 Entrez gene
SwissProt O45394 EMBL-EBI
WormBase CE37509 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12180_AT molybdenum cofactor sulfurase family protein at
ATH1-121501:249025_AT molybdenum cofactor sulfurase family protein at
HG-U133_PLUS_2:221636_S_AT MOCO sulphurase C-terminal domain containing 2 hs
HG-U133A:221636_S_AT MOCO sulphurase C-terminal domain containing 2 hs
HG-U133A_2:221636_S_AT MOCO sulphurase C-terminal domain containing 2 hs
HG-U133_PLUS_2:219527_AT MOCO sulphurase C-terminal domain containing 2 hs
HG-U133A:219527_AT MOCO sulphurase C-terminal domain containing 2 hs
HG-U133A_2:219527_AT MOCO sulphurase C-terminal domain containing 2 hs
HU35KSUBB:RC_T63490_AT MOCO sulphurase C-terminal domain containing 2 hs
U133_X3P:G12053356_3P_S_AT MOCO sulphurase C-terminal domain containing 2 hs
U133_X3P:HS.4932.1.S1_3P_AT MOCO sulphurase C-terminal domain containing 2 hs
HG-U133_PLUS_2:227417_AT MOCO sulphurase C-terminal domain containing 2 hs
HG-U133B:227417_AT MOCO sulphurase C-terminal domain containing 2 hs
HG-U95C:49059_AT MOCO sulphurase C-terminal domain containing 2 hs
HG-U95E:78770_AT MOCO sulphurase C-terminal domain containing 2 hs
HG-U95C:66085_AT MOCO sulphurase C-terminal domain containing 2 hs
HU35KSUBB:RC_AA037399_AT MOCO sulphurase C-terminal domain containing 2 hs
HU35KSUBD:RC_C21284_I_AT MOCO sulphurase C-terminal domain containing 2 hs
MU11KSUBA:AA511464_S_AT MOCO sulphurase C-terminal domain containing 2 mm
MG-U74AV2:100633_AT MOCO sulphurase C-terminal domain containing 2 mm
MOE430A:1416766_AT MOCO sulphurase C-terminal domain containing 2 mm
MOUSE430A_2:1416766_AT MOCO sulphurase C-terminal domain containing 2 mm
MOUSE430_2:1416766_AT MOCO sulphurase C-terminal domain containing 2 mm
MU19KSUBB:TC27385_AT MOCO sulphurase C-terminal domain containing 2 (Mosc2), mRNA mm
RG-U34A:AF095741_G_AT Mg87 protein rn
RG-U34A:AF095741_AT Mg87 protein rn
RAE230A:1368071_AT Mg87 protein rn
RAT230_2:1368071_AT Mg87 protein rn
Protein Similarities
Method ID Description E-Value
blast CAB05497 Hypothetical protein F22B8.7 [Caenorhabditis elegans] ref|NP_507051.2| F22B8.7 [Caenorhabditis elegans] 0.0
blast AAB42288 Hypothetical protein F53E10.1 [Caenorhabditis elegans] ref|NP_503716.1| F53E10.1 [Caenorhabditis elegans] 1.0E-171
blast CAB05494 Hypothetical protein F22B8.3 [Caenorhabditis elegans] ref|NP_507050.1| F22B8.3 [Caenorhabditis elegans] 1.0E-166
blast CAE62510 Hypothetical protein CBG06615 [Caenorhabditis briggsae] 1.0E-161
Protein Domains
Database ID Description E-Value
Pfam IPR005303 EMBL-EBI MOSC N-terminal beta barrel domain 3.4E-56
Pfam IPR005302 EMBL-EBI MOSC domain 3.2E-25
Pfam IPR005303 EMBL-EBI MOSC N-terminal beta barrel domain 3.4E-56
Pfam IPR005302 EMBL-EBI MOSC domain 3.2E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000002261 9 21-43,53-75,101-123,138-160,181-198,208-230,257-279,289-311,335-354
Sequence
Target Sequence 
>C. ELEGANS:179302_AT
gaacaattcgtgctacactcttcaagaacttgaaacaggatggctatgactgtggtgatg
aggttgccaagttgttgtcagattatatcgaagagccaaattatcgcctgattttctaca
aagaaggactttacaccgaaagaacggtcattcctgatgatcaatggtggaacaatccag
tgccaaagagaaatgacgattcaggtttcactgatttggccccgtttcatattgccaccg
acgcttcactaaaagttctcaatgaaaagttggacaataagataaccatgcgatacttcc
gcccatcaatctacatcgaaggttgcgccgcgtgggacgaggacaaatgggccgaaattc
gcatcggagacgcgcatctcgaatgcttcgcaccgtgcacacgatgcgtcctgacgactg
ttgatccagtaaaaggagagatgagcaaagaaatgcagccactgaagaagctcagagagt
tccgactggttccagacggcaaaatgcgaaaagttcatatggaaagcccagttttcggtg
tgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAATTCGTGCTACACTCTTCAA 134 353 608 Antisense
GAGGTTGCCAAGTTGTTGTCAGATT 442 403 667 Antisense
GAGCCAAATTATCGCCTGATTTTCT 405 385 700 Antisense
GAACGGTCATTCCTGATGATCAATG 145 349 749 Antisense
TGATTTGGCCCCGTTTCATATTGCC 140 563 819 Antisense
GCCACCGACGCTTCACTAAAAGTTC 429 277 841 Antisense
AGATAACCATGCGATACTTCCGCCC 226 67 887 Antisense
GCACACGATGCGTCCTGACGACTGT 94 315 1004 Antisense
AGCTCAGAGAGTTCCGACTGGTTCC 667 79 1076 Antisense
GACTGGTTCCAGACGGCAAAATGCG 374 375 1091 Antisense
TGGAAAGCCCAGTTTTCGGTGTGTA 54 547 1127 Antisense
Sequence Source Affymetrix Proprietary Database