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[179301_at]

Description T26F2.2 /REP_DB=WormBase Gene ID /WP=CE14203 /TR=O18133 /GB=CAB04841.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 63      6grp_total > 63      4grp_total > 17      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 73.8
(-2.3)
A 		115.7
(0.4)
A 		62.4
(-3)
A 		156.5
(3)
P 		94
B 60.2
(-3)
A 		100.3
(1)
A 		103
(1.3)
P 		120
(3)
M 		60
C 72
(-3)
A 		111.2
(-1.7)
A 		133.7
(-0.9)
P 		249.4
(3)
P 		177
avr 68.7
(-3) 		109.1
(-0.7) 		99.7
(-1.3) 		175.3
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 91
(-3)
A 		126.1
(-0.7)
P 		184.1
(3)
P 		162.9
(1.6)
P 		123.6
(-0.9)
P 		136.5
(-0.1)
P 		93
B 124.4
(-2.2)
P 		115.9
(-3)
P 		179.5
(3)
P 		150.1
(0.2)
P 		129.9
(-1.7)
P 		122
(-2.4)
P 		64
C 151.2
(2.7)
M 		139.2
(0.2)
P 		152.7
(3)
P 		141.6
(0.7)
P 		143.4
(1.1)
P 		123.4
(-3)
P 		29
avr 122.2
(-3) 		127.1
(-2.4) 		172.1
(3) 		151.5
(0.5) 		132.3
(-1.8) 		127.3
(-2.4) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 26.9
(3)
A 		25.1
(2)
A 		16.3
(-3)
A 		22.9
(0.7)
P 		11
B 19.2
(-3)
A 		24.8
(2.3)
A 		23.9
(1.4)
P 		25.6
(3)
M 		6
C 23.8
(-3)
A 		32
(-0.8)
A 		46.6
(3)
P 		42
(1.8)
P 		23
avr 23.3
(-3) 		27.3
(0.5) 		28.9
(1.9) 		30.2
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 16.8
(-3)
A 		44.8
(3)
P 		40.1
(2)
P 		41.3
(2.3)
P 		37.3
(1.4)
P 		33.2
(0.5)
P 		28
B 43.3
(-1)
P 		38.6
(-3)
P 		43.6
(-0.9)
P 		39.7
(-2.5)
P 		52.8
(3)
P 		45.5
(-0.1)
P 		14
C 56
(3)
M 		42.5
(0.1)
P 		38.9
(-0.7)
P 		28.5
(-3)
P 		46.4
(0.9)
P 		41.3
(-0.2)
P 		28
avr 38.7
(-1.5) 		42
(0.7) 		40.9
(-0.1) 		36.5
(-3) 		45.5
(3) 		40
(-0.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179301_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14133
Sequence Type Exemplar sequence
Representative Public ID T26F2.2 NCBI
Target Description T26F2.2 /REP_DB=WormBase Gene ID /WP=CE14203 /TR=O18133 /GB=CAB04841.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074073(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074073 NCBI Caenorhabditis elegans T26F2.2 (T26F2.2) mRNA, complete cds. 11/11 A 
SNAP00000032931 ENSEMBL cdna:SNAP chromosome:CEL140:V:13982159:13983300:-1 11/11 None
GENEFINDER00000032933 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13982159:13985559:-1 11/11 None
T26F2.2 ENSEMBL cdna:known chromosome:CEL140:V:13982159:13985559:-1 gene:T26F2.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13982158-13985559(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26F2.2
Entrez Gene 179892 Entrez gene
SwissProt O18133 EMBL-EBI
WormBase CE14203 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04841 Hypothetical protein T26F2.2 [Caenorhabditis elegans] ref|NP_506474.1| T26F2.2 [Caenorhabditis elegans] 0.0
blast CAB04841 Hypothetical protein T26F2.2 [Caenorhabditis elegans] ref|NP_506474.1| T26F2.2 [Caenorhabditis elegans] 1.0E-173
blast CAE66174 Hypothetical protein CBG11412 [Caenorhabditis briggsae] 5.0E-65
blast CAE66174 Hypothetical protein CBG11412 [Caenorhabditis briggsae] 1.0E-64
blast CAE66173 Hypothetical protein CBG11411 [Caenorhabditis briggsae] 9.0E-62
blast CAE66173 Hypothetical protein CBG11411 [Caenorhabditis briggsae] 2.0E-61
Sequence
Target Sequence 
>C. ELEGANS:179301_AT
attgcgctccggaagaacggcgttatttttctctacaagaatgagaaatcgtatgaaggc
aaatatggaggtggctacaattttgaaaagtatatgaccctgaacgaagtaggacatccc
cacaatccaaacgaaaaggtatcaaatgcgacttgctcaaaagttgttctccgaacgtct
ttcgtaagcagaaaagaaacaataaaagtctattacgcttctgaagttgatgcggttgac
aaaaatggaaatttcgtggagatgaaatctaccaaatcggatcatggtaaatggttacac
tggaacagccagaagcactacttccaatcgttccttggaaacgttccaactatcctaatt
ggacgaaaggatcaaaatgactgtgtgtaccaggttgacaaaatcaaaactagcgaaatt
ccgaagatggatgtgaagtggaaggttcagaattgccttgcacagctgttcacagtgctc
aat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCGCTCCGGAAGAACGGCGTTA 515 3 898 Antisense
GAACGAAGTAGGACATCCCCACAAT 681 343 999 Antisense
ACATCCCCACAATCCAAACGAAAAG 363 105 1011 Antisense
GCGACTTGCTCAAAAGTTGTTCTCC 200 289 1045 Antisense
TGTTCTCCGAACGTCTTTCGTAAGC 538 559 1062 Antisense
GCTTCTGAAGTTGATGCGGTTGACA 505 305 1114 Antisense
AGAAGCACTACTTCCAATCGTTCCT 588 73 1208 Antisense
GGAAACGTTCCAACTATCCTAATTG 4 527 1234 Antisense
AATGACTGTGTGTACCAGGTTGACA 80 165 1273 Antisense
GGTTCAGAATTGCCTTGCACAGCTG 332 505 1341 Antisense
TGCACAGCTGTTCACAGTGCTCAAT 445 577 1356 Antisense
Sequence Source Affymetrix Proprietary Database