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[179299_at]

Description R10E4.3 /REP_DB=WormBase Gene ID /WP=CE03557 /TR=Q21901 /GB=CAA90764.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 10.1
(-2.7)
A 		9.8
(-2.7)
A 		4.7
(-3)
A 		109.3
(3)
A 		105
B 18.7
(-1.2)
A 		4.8
(-3)
A 		22.1
(-0.8)
A 		52
(3)
A 		47
C 14.5
(-2.2)
A 		23
(-1.5)
A 		5.3
(-3)
A 		74.7
(3)
P 		69
avr 14.4
(-2.7) 		12.5
(-2.8) 		10.7
(-3) 		78.7
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 8.8
(-1.9)
A 		8.4
(-2)
A 		2
(-3)
A 		2.7
(-2.9)
A 		25.9
(0.7)
A 		40.7
(3)
A 		39
B 6.5
(-2.2)
A 		2.1
(-3)
A 		4.6
(-2.5)
A 		10.7
(-1.4)
A 		34.9
(3)
A 		33.9
(2.8)
A 		33
C 3
(-3)
A 		9.3
(-2.1)
A 		4.1
(-2.8)
A 		29.2
(0.7)
A 		5.2
(-2.7)
A 		45.1
(3)
A 		42
avr 6.1
(-2.6) 		6.6
(-2.5) 		3.6
(-3) 		14.2
(-1.2) 		22
(0) 		39.9
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3.7
(-2)
A 		2.1
(-2.6)
A 		1.2
(-3)
A 		16
(3)
A 		15
B 6
(-0.1)
A 		1.2
(-3)
A 		5.1
(-0.6)
A 		11.1
(3)
A 		10
C 4.8
(-1.3)
A 		6.6
(-0.3)
A 		1.8
(-3)
A 		12.6
(3)
P 		11
avr 4.8
(-1.8) 		3.3
(-2.7) 		2.7
(-3) 		13.2
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.6
(-2.2)
A 		3
(-1.4)
A 		0.4
(-3)
A 		0.7
(-2.8)
A 		7.8
(1.7)
A 		9.9
(3)
A 		10
B 2.3
(-2.3)
A 		0.7
(-3)
A 		1.1
(-2.8)
A 		2.8
(-2.1)
A 		14.2
(3)
A 		12.6
(2.3)
A 		14
C 1.1
(-3)
A 		2.8
(-2.3)
A 		1.1
(-3)
A 		5.9
(-0.9)
A 		1.7
(-2.7)
A 		15.1
(3)
A 		14
avr 1.7
(-2.6) 		2.2
(-2.3) 		0.9
(-3) 		3.1
(-1.9) 		7.9
(0.6) 		12.5
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179299_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6859
Sequence Type Exemplar sequence
Representative Public ID R10E4.3 NCBI
Target Description R10E4.3 /REP_DB=WormBase Gene ID /WP=CE03557 /TR=Q21901 /GB=CAA90764.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065456(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065456 NCBI Caenorhabditis elegans R10E4.3 (R10E4.3) mRNA, complete cds. 11/11 None
GENEFINDER00000016408 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4285783:4287442:-1 11/11 None
SNAP00000016396 ENSEMBL cdna:SNAP chromosome:CEL140:III:4285831:4287442:-1 11/11 None
R10E4.3 ENSEMBL cdna:known chromosome:CEL140:III:4285831:4287442:-1 gene:R10E4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4285830-4287442(-) 94.77 100.0
Public Domain and Genome References
Gene Title
Ensembl R10E4.3
Entrez Gene 187769 Entrez gene
SwissProt Q21901 EMBL-EBI
WormBase CE03557 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90764 Hypothetical protein R10E4.3 [Caenorhabditis elegans] ref|NP_497857.1| R10E4.3 [Caenorhabditis elegans] 1.0E-133
blast CAA90764 Hypothetical protein R10E4.3 [Caenorhabditis elegans] ref|NP_497857.1| R10E4.3 [Caenorhabditis elegans] 1.0E-132
blast CAA94361 Hypothetical protein R102.7 [Caenorhabditis elegans] ref|NP_501983.2| R102.7 [Caenorhabditis elegans] 1.0E-50
blast CAE66914 Hypothetical protein CBG12302 [Caenorhabditis briggsae] 4.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497857.1 1 20-42
R10E4.3 1 20-42
GENEFINDER00000016408 1 20-42
SNAP00000016396 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:179299_AT
aagcgaggcgcttcgatagaaactaattttaataatgagactatggaacagttcgacaat
gatgaaactgctggaattgaatatttggtaccgttgaaacgatcgaaggaagaaaaggaa
aagaaaaagaagaggaagacgaaagaaagaatggatgccctggacgaactgacacgtgtc
acttcaaacgatcgaattcctctgttgtctcgaatagttcaccacaaccaaccatcacga
aaaacactgaagccagccacatcaacaatccgtgaacgaacacttgaaactcagtcaacg
atggaagatgataaaacacaattaaaagtgatcagaaaaccatcgtctagaccacacaag
aagccatccacaatggagagtgctgtgaaaaagaagaaatcggcggcaacgttaaaaact
gttcgtaaaacgacacgggatgagctgtcacttgcaacaacgctcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCGAGGCGCTTCGATAGAAACTA 443 149 418 Antisense
GAATGGATGCCCTGGACGAACTGAC 223 333 566 Antisense
GACACGTGTCACTTCAAACGATCGA 666 367 588 Antisense
TCGAATTCCTCTGTTGTCTCGAATA 163 601 609 Antisense
GTCTCGAATAGTTCACCACAACCAA 651 469 624 Antisense
CCACAACCAACCATCACGAAAAACA 458 275 639 Antisense
AAAACACTGAAGCCAGCCACATCAA 266 131 658 Antisense
GCCACATCAACAATCCGTGAACGAA 101 279 673 Antisense
GAAGCCATCCACAATGGAGAGTGCT 45 345 777 Antisense
AACGACACGGGATGAGCTGTCACTT 350 145 846 Antisense
AGCTGTCACTTGCAACAACGCTCGA 533 79 860 Antisense
Sequence Source Affymetrix Proprietary Database