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[179298_at] G-protein coupled receptor, srv family

Description F53F1.8 /REP_DB=WormBase Gene ID /WP=CE10946 /TR=P92000 /GB=CAB03130.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 19      6grp_cgc > 70      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 37.2
(-3)
A 		42
(-2.2)
A 		39.1
(-2.7)
A 		72.6
(3)
A 		35
B 51.3
(3)
M 		12.5
(-2.9)
A 		34.3
(0.4)
A 		12.1
(-3)
A 		39
C 24.4
(-2.3)
P 		68.1
(2.5)
A 		18.1
(-3)
A 		72.6
(3)
A 		55
avr 37.6
(-1.1) 		40.9
(-0.2) 		30.5
(-3) 		52.4
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 49.4
(2.5)
A 		43.3
(0.6)
A 		50.9
(3)
A 		38.6
(-0.9)
A 		44.3
(0.9)
M 		31.8
(-3)
A 		19
B 48.4
(2.6)
A 		13.7
(-2.4)
A 		51.2
(3)
P 		22
(-1.2)
A 		23
(-1)
A 		9.4
(-3)
A 		42
C 32.1
(-1.6)
A 		59.8
(3)
P 		24.8
(-2.8)
A 		42.5
(0.1)
A 		35.8
(-1)
A 		23.9
(-3)
A 		36
avr 43.3
(3) 		38.9
(1.8) 		42.3
(2.7) 		34.4
(0.5) 		34.4
(0.5) 		21.7
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 13.5
(3)
A 		9.1
(-3)
A 		10.2
(-1.5)
A 		10.6
(-1)
A 		4
B 16.4
(3)
M 		3.1
(-2.8)
A 		7.9
(-0.7)
A 		2.6
(-3)
A 		14
C 8.1
(-2.2)
P 		19.6
(3)
A 		6.3
(-3)
A 		12.2
(-0.3)
A 		13
avr 12.7
(3) 		10.6
(0.3) 		8.1
(-3) 		8.5
(-2.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.1
(-1.9)
A 		15.4
(3)
A 		11.1
(-0.4)
A 		9.8
(-1.4)
A 		13.4
(1.4)
M 		7.7
(-3)
A 		8
B 16.8
(3)
A 		4.6
(-2.5)
A 		12.4
(1)
P 		5.8
(-2)
A 		9.3
(-0.4)
A 		3.5
(-3)
A 		13
C 11.9
(-0.2)
A 		18.3
(3)
P 		6.3
(-3)
A 		8.6
(-1.9)
A 		11.6
(-0.4)
A 		8
(-2.2)
A 		12
avr 12.6
(2.8) 		12.8
(3) 		9.9
(0.3) 		8.1
(-1.4) 		11.4
(1.7) 		6.4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179298_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12922
Sequence Type Exemplar sequence
Representative Public ID F53F1.8 NCBI
Target Description F53F1.8 /REP_DB=WormBase Gene ID /WP=CE10946 /TR=P92000 /GB=CAB03130.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073927
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073927 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-9) (srv-9) mRNA, complete cds. None
SNAP00000038184 ENSEMBL cdna:SNAP chromosome:CEL140:V:13423828:13425369:-1 None
F53F1.8 ENSEMBL cdna:known chromosome:CEL140:V:13423731:13425607:-1 gene:F53F1.8 None
GENEFINDER00000038197 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13424027:13425607:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13423827-13425607(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srv family
Gene Symbol srv-9
Ensembl F53F1.8
Entrez Gene 186172 Entrez gene
SwissProt P92000 EMBL-EBI
WormBase CE33107 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03130 Hypothetical protein F53F1.8 [Caenorhabditis elegans] ref|NP_506328.2| Serpentine Receptor, class V family member (srv-9) [Caenorhabditis elegans] 1.0E-173
blast CAE62598 Hypothetical protein CBG06713 [Caenorhabditis briggsae] 1.0E-126
blast CAB03126 Hypothetical protein F53F1.9 [Caenorhabditis elegans] ref|NP_506329.1| Serpentine Receptor, class V family member (srv-10) [Caenorhabditis elegans] 1.0E-122
blast CAB03130 Hypothetical protein F53F1.8 [Caenorhabditis elegans] ref|NP_506328.2| Serpentine Receptor, class V family member (srv-9) [Caenorhabditis elegans] 1.0E-105
blast CAB03130 Hypothetical protein F53F1.8 [Caenorhabditis elegans] ref|NP_506328.2| Serpentine Receptor, class V family member (srv-9) [Caenorhabditis elegans] 1.0E-102
blast CAE62598 Hypothetical protein CBG06713 [Caenorhabditis briggsae] 2.0E-82
blast CAB03126 Hypothetical protein F53F1.9 [Caenorhabditis elegans] ref|NP_506329.1| Serpentine Receptor, class V family member (srv-10) [Caenorhabditis elegans] 4.0E-82
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506328.2 7 13-35,56-78,93-115,136-158,183-205,248-267,277-299
F53F1.8 7 13-35,56-78,93-115,136-158,183-205,248-267,277-299
SNAP00000038184 5 32-54,61-83,107-129,226-245,255-277
GENEFINDER00000038197 5 13-35,56-78,93-115,136-158,183-205
Sequence
Target Sequence 
>C. ELEGANS:179298_AT
tactcggttggatcggatgacactgatgcagattggttctataattttgtagcaattatg
gaagtggttttggttctggcgataattgtgaataatgtggttacatatactatgttcaga
ttgaaatttaacaagaatatttgtcatggctcggttcgcaagagtgtcaattcccagttt
gaccttggagtcacacgtgtttttggtattttgcaaaaatacttctgtcggaaaactctc
aaattaacgttattaacccgattttcgaatcaaccaaaaaaatctgccatcaaatcaaac
tctattacaccaagtcaacatcaatcgaaccaagagaaacaaaaacgagaaaatggactg
gacaaaatgacgttcatagtgtgcctggttgagctgatctattttgcatttgtagtttat
tcacttcaaatcaatcaatacatgaataagcgaatattttactttttatataacatcctt
tgtgtcatatattcaacgttctcagcctggatgcttctgatcatatcaaaacctattaat
tctcaagttcgtcagcgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTCGGTTGGATCGGATGACACTG 604 645 526 Antisense
AAGTGGTTTTGGTTCTGGCGATAAT 552 159 587 Antisense
AATATTTGTCATGGCTCGGTTCGCA 358 173 661 Antisense
GGTTCGCAAGAGTGTCAATTCCCAG 384 507 678 Antisense
CAATTCCCAGTTTGACCTTGGAGTC 355 179 693 Antisense
AAATCTGCCATCAAATCAAACTCTA 419 117 805 Antisense
AATGACGTTCATAGTGTGCCTGGTT 450 165 891 Antisense
GTGTGCCTGGTTGAGCTGATCTATT 621 487 904 Antisense
TATATTCAACGTTCTCAGCCTGGAT 484 661 1013 Antisense
AGCCTGGATGCTTCTGATCATATCA 564 81 1029 Antisense
TTAATTCTCAAGTTCGTCAGCGATT 355 683 1061 Antisense
Sequence Source Affymetrix Proprietary Database