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[179297_at]

Description C18D4.3 /REP_DB=WormBase Gene ID /WP=CE15633 /TR=O45261 /GB=CAB03901.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 13.1
(-1.2)
A 		12.1
(-1.5)
A 		25.2
(3)
A 		7.8
(-3)
A 		17
B 1.3
(-3)
A 		22.5
(2.7)
A 		5
(-2)
A 		23.5
(3)
A 		22
C 26.2
(-2.3)
A 		33.9
(-0.5)
A 		23.4
(-3)
A 		49
(3)
A 		26
avr 13.5
(-3) 		22.8
(1.2) 		17.9
(-1) 		26.8
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 5.6
(-2)
A 		1.9
(-3)
A 		3.8
(-2.5)
A 		8.5
(-1.1)
A 		23.3
(3)
A 		15.5
(0.8)
A 		21
B 4.2
(-0.9)
A 		1.9
(-2.5)
A 		3.9
(-1.1)
A 		1.9
(-2.5)
A 		9.9
(3)
A 		1.2
(-3)
A 		9
C 8.4
(-2.1)
A 		13.7
(-1.3)
A 		22.9
(0.2)
A 		4.1
(-2.8)
A 		40.5
(3)
A 		3.1
(-3)
A 		37
avr 6.1
(-2.6) 		5.8
(-2.7) 		10.2
(-1.4) 		4.8
(-3) 		24.6
(3) 		6.6
(-2.5) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.8
(1)
A 		2.6
(-1.4)
A 		6.6
(3)
A 		1.1
(-3)
A 		6
B 0.4
(-3)
A 		5.6
(3)
A 		1.2
(-2.1)
A 		5
(2.3)
A 		5
C 8.7
(-0.8)
A 		9.7
(3)
A 		8.1
(-3)
A 		8.3
(-2.3)
A 		2
avr 4.6
(-3) 		6
(3) 		5.3
(0) 		4.8
(-2.1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1
(-2.7)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		2.2
(-1.6)
A 		7
(3)
A 		3.8
(-0)
A 		6
B 1.5
(-1.3)
A 		0.6
(-2.8)
A 		0.9
(-2.3)
A 		0.5
(-3)
A 		4
(3)
A 		0.5
(-3)
A 		4
C 3.1
(-1.9)
A 		4.2
(-1.3)
A 		5.8
(-0.6)
A 		0.8
(-3)
A 		13.1
(3)
A 		1
(-2.9)
A 		12
avr 1.9
(-2.4) 		1.8
(-2.5) 		2.5
(-1.9) 		1.2
(-3) 		8
(3) 		1.8
(-2.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179297_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14430
Sequence Type Exemplar sequence
Representative Public ID C18D4.3 NCBI
Target Description C18D4.3 /REP_DB=WormBase Gene ID /WP=CE15633 /TR=O45261 /GB=CAB03901.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075040(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075040 NCBI Caenorhabditis elegans C18D4.3 (C18D4.3) mRNA, complete cds. 11/11 None
SNAP00000019852 ENSEMBL cdna:SNAP chromosome:CEL140:V:17534929:17535362:-1 11/11 None
GENEFINDER00000019860 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17534929:17535362:-1 11/11 None
C18D4.3 ENSEMBL cdna:known chromosome:CEL140:V:17534929:17535362:-1 gene:C18D4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17534928-17535362(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18D4.3
Entrez Gene 182783 Entrez gene
SwissProt O45261 EMBL-EBI
WormBase CE15633 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03901 Hypothetical protein C18D4.3 [Caenorhabditis elegans] ref|NP_507441.1| C18D4.3 [Caenorhabditis elegans] 5.0E-70
blast CAB04209 Hypothetical protein F28B1.2 [Caenorhabditis elegans] ref|NP_507317.1| F28B1.2 [Caenorhabditis elegans] 3.0E-21
blast CAB04208 Hypothetical protein F28B1.1 [Caenorhabditis elegans] ref|NP_507316.1| F28B1.1 [Caenorhabditis elegans] 8.0E-14
Sequence
Target Sequence 
>C. ELEGANS:179297_AT
gtacaacgctgatgcagtcgcaacttgtggagtgctcaaagttattaacagcactgacga
cttcgagtggtaccacaaacaaggaaaatatggcgattcgcaggttgggaatggacgggt
gttagcaagcttctatacgagggtgttttgtgattctccgtatgaaccagttgcatttag
tgaaaacaatccacctatttatctcgacaatctccctgtcatttactgtgattcgaatcc
aatgaccaacaagtcaggagtctgggttacacatgggattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACAACGCTGATGCAGTCGCAACT 515 461 57 Antisense
GCAGTCGCAACTTGTGGAGTGCTCA 649 311 70 Antisense
CTGACGACTTCGAGTGGTACCACAA 121 237 110 Antisense
AATGGACGGGTGTTAGCAAGCTTCT 477 161 166 Antisense
GCAAGCTTCTATACGAGGGTGTTTT 330 321 181 Antisense
GGGTGTTTTGTGATTCTCCGTATGA 475 497 197 Antisense
AAACAATCCACCTATTTATCTCGAC 548 129 240 Antisense
TATTTATCTCGACAATCTCCCTGTC 92 663 252 Antisense
ATCTCCCTGTCATTTACTGTGATTC 7 33 266 Antisense
GTGATTCGAATCCAATGACCAACAA 677 483 284 Antisense
GGAGTCTGGGTTACACATGGGATTC 454 515 313 Antisense
Sequence Source Affymetrix Proprietary Database