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[179296_at]

Description C47A4.2 /REP_DB=WormBase Gene ID /WP=CE19738 /TR=Q9U3L8 /GB=CAB62793.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 13      4grp_high_8_8 > 49      6grp_total > 23      4grp_total > 62      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 657
1 2 3 4 range
A 687.2
(3)
P 		427.4
(-0.4)
P 		509.6
(0.7)
P 		230.3
(-3)
P 		457
B 745
(3)
P 		405
(-0.1)
P 		418.9
(0)
P 		87.6
(-3)
A 		657
C 627.4
(3)
P 		418.8
(0.5)
P 		564.2
(2.2)
P 		133
(-3)
P 		494
avr 686.5
(3) 		417.1
(-0) 		497.6
(0.9) 		150.3
(-3) 		536

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 359.8
(3)
P 		314.3
(2)
P 		345.2
(2.7)
P 		245.7
(0.4)
P 		170.8
(-1.3)
P 		96.9
(-3)
A 		263
B 357.8
(2.4)
P 		384.2
(3)
P 		234.4
(-0.5)
P 		294.3
(0.9)
P 		167.8
(-2.1)
P 		127.9
(-3)
P 		256
C 325.5
(2)
P 		366.4
(3)
P 		318.4
(1.8)
P 		241.6
(-0.1)
P 		156.2
(-2.2)
P 		125.2
(-3)
P 		241
avr 347.7
(2.8) 		355
(3) 		299.3
(1.6) 		260.5
(0.6) 		164.9
(-1.8) 		116.7
(-3) 		238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 250.2
(3)
P 		92.8
(-1.4)
P 		133.2
(-0.2)
P 		33.7
(-3)
P 		217
B 237.6
(3)
P 		100
(-0.8)
P 		97.1
(-0.9)
P 		18.7
(-3)
A 		219
C 207.7
(3)
P 		120.4
(0.2)
P 		196.7
(2.6)
P 		22.4
(-3)
P 		185
avr 231.8
(3) 		104.4
(-0.7) 		142.3
(0.4) 		24.9
(-3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 66.3
(-0.1)
P 		111.8
(3)
P 		75.2
(0.5)
P 		62.3
(-0.4)
P 		51.5
(-1.1)
P 		23.6
(-3)
A 		88
B 124.5
(2.7)
P 		127.9
(3)
P 		56.9
(-2.3)
P 		77.9
(-0.7)
P 		68.2
(-1.5)
P 		47.7
(-3)
P 		80
C 120.7
(3)
P 		111.8
(2.3)
P 		81
(-0)
P 		48.6
(-2.5)
P 		50.5
(-2.3)
P 		41.9
(-3)
P 		79
avr 103.8
(2) 		117.2
(3) 		71
(-0.5) 		62.9
(-1.1) 		56.7
(-1.6) 		37.7
(-3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179296_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8452
Sequence Type Exemplar sequence
Representative Public ID C47A4.2 NCBI
Target Description C47A4.2 /REP_DB=WormBase Gene ID /WP=CE19738 /TR=Q9U3L8 /GB=CAB62793.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027897(11), NM_001027898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027897 NCBI Caenorhabditis elegans C47A4.2a (C47A4.2) mRNA, complete cds. 11/11 None
NM_001027898 NCBI Caenorhabditis elegans C47A4.2b (C47A4.2) mRNA, complete cds. 11/11 None
SNAP00000017713 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13726938:13732560:1 11/11 None
GENEFINDER00000017721 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13727930:13737467:1 11/11 None
C47A4.2a.1 ENSEMBL cdna:known chromosome:CEL140:IV:13726897:13732670:1 gene:C47A4.2 11/11 None
C47A4.2a.2 ENSEMBL cdna:known chromosome:CEL140:IV:13726899:13732670:1 gene:C47A4.2 11/11 None
C47A4.2b ENSEMBL cdna:known chromosome:CEL140:IV:13728097:13732560:1 gene:C47A4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13728126-13732566(+) 100.0 100.0
Public Domain and Genome References
Ensembl C47A4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE46670 Hypothetical protein C47A4.2a [Caenorhabditis elegans] ref|NP_001023068.1| C47A4.2a [Caenorhabditis elegans] 0.0
blast CAB62793 Hypothetical protein C47A4.2b [Caenorhabditis elegans] ref|NP_001023069.1| C47A4.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002259 EMBL-EBI Delayed-early response protein/equilibrative nucleoside transporter 3.1E-35
Pfam IPR002259 EMBL-EBI Delayed-early response protein/equilibrative nucleoside transporter 3.2E-33
Pfam IPR002259 EMBL-EBI Delayed-early response protein/equilibrative nucleoside transporter 3.1E-35
Pfam IPR002259 EMBL-EBI Delayed-early response protein/equilibrative nucleoside transporter 3.2E-33
Pfam IPR002259 EMBL-EBI Delayed-early response protein/equilibrative nucleoside transporter 3.1E-35
Pfam IPR002259 EMBL-EBI Delayed-early response protein/equilibrative nucleoside transporter 3.2E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023068.1 11 45-67,91-113,120-142,152-171,191-213,218-240,279-301,316-338,345-367,380-399,420-442
NP_001023069.1 11 51-73,97-119,126-148,158-177,197-219,224-246,285-307,322-344,351-373,386-405,426-448
C47A4.2a.1 11 45-67,91-113,120-142,152-171,191-213,218-240,279-301,316-338,345-367,380-399,420-442
C47A4.2a.2 11 45-67,91-113,120-142,152-171,191-213,218-240,279-301,316-338,345-367,380-399,420-442
C47A4.2b 11 51-73,97-119,126-148,158-177,197-219,224-246,285-307,322-344,351-373,386-405,426-448
SNAP00000017713 11 45-67,91-113,120-142,152-171,191-213,218-240,279-301,316-338,345-367,380-399,420-442
GENEFINDER00000017721 11 83-105,129-151,158-180,190-209,229-251,256-278,317-339,354-376,383-405,418-437,457-479
Sequence
Target Sequence 
>C. ELEGANS:179296_AT
gtcgcaactttggcattctcaacacaagctgaaactgttgcacttatttattttggaata
tcacttcttattctgtttgtttgtcttgtgtcatggtggttctgcaagaaaatgtgctgg
cttcaatgtatttgtgtatttcttgtatattttgtgagtctctccgtattcccaacagtt
cttgccggatttcaaccaggttacaccgtttttcctaacgatgtgtacgctggaatcgca
gtgtttttaaattttaatttcttcgccgctgtcggaaatgttgccgctacttttgttact
ttccctggtccacgtctattgattgttccctgcgtaattcgtctattattcattccattc
ttcatgttcagcaactatttaccacattctcgtactatgggagtattattcaccaacgaa
tggatcttcttttttggtaacacattattggcattcacaagtggatatttctcatctttg
ggaatgatgtatacaccacgtgtctgcccaccggaatactcaaaattagctggtcaagtg
tctgcattgtctctggttcttggtattactgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCAACTTTGGCATTCTCAACAC 306 475 649 Antisense
TGTCTTGTGTCATGGTGGTTCTGCA 290 559 730 Antisense
TATTTTGTGAGTCTCTCCGTATTCC 350 663 796 Antisense
GTATTCCCAACAGTTCTTGCCGGAT 123 453 814 Antisense
TTGCCGGATTTCAACCAGGTTACAC 100 695 830 Antisense
GAAATGTTGCCGCTACTTTTGTTAC 267 359 923 Antisense
TGGTCCACGTCTATTGATTGTTCCC 76 553 954 Antisense
TCGTCTATTATTCATTCCATTCTTC 276 605 987 Antisense
TCAGCAACTATTTACCACATTCTCG 374 625 1016 Antisense
TGATGTATACACCACGTGTCTGCCC 152 567 1133 Antisense
GTCTCTGGTTCTTGGTATTACTGCT 702 469 1197 Antisense
Sequence Source Affymetrix Proprietary Database