[Home] | [Total List]

[179293_at]

Description F31D4.9 /REP_DB=WormBase Gene ID /WP=CE23694 /TR=Q9U3H4 /GB=CAB54227.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 62      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 26      6grp_total > 61      4grp_total > 32      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2742
1 2 3 4 range
A 3829.7
(-3)
P 		5625.8
(1.1)
P 		6444
(3)
P 		5919.4
(1.8)
P 		2614
B 3702
(-3)
P 		5676.6
(1.9)
P 		6144.8
(3)
P 		5676.5
(1.8)
P 		2443
C 3970.1
(-3)
P 		4897.4
(-0.1)
P 		5182.2
(0.8)
P 		5887.7
(3)
P 		1918
avr 3833.9
(-3) 		5399.9
(1.5) 		5923.7
(3) 		5827.9
(2.7) 		2090

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4129
1 2 3 4 5 6 range
A 4851
(-1.5)
P 		4688.9
(-1.7)
P 		7811
(3)
P 		6794
(1.5)
P 		4979
(-1.3)
P 		3845.8
(-3)
P 		3965
B 4255.7
(-2.8)
P 		5988.3
(0.3)
P 		7511
(3)
P 		5936.3
(0.2)
P 		5800.2
(-0)
P 		4140.2
(-3)
P 		3371
C 4064
(-3)
P 		5939.9
(-0.1)
P 		5990.4
(-0)
P 		7974.9
(3)
P 		4628
(-2.1)
P 		5021.9
(-1.5)
P 		3911
avr 4390.2
(-2.9) 		5539
(-0.4) 		7104.1
(3) 		6901.7
(2.6) 		5135.7
(-1.3) 		4336
(-3) 		2768
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 940
1 2 3 4 range
A 1394.4
(0.9)
P 		1221.2
(-0.4)
P 		1684.6
(3)
P 		866.5
(-3)
P 		818
B 1180.5
(-3)
P 		1402
(2.5)
P 		1423.9
(3)
P 		1209.7
(-2.3)
P 		243
C 1314.2
(-0.6)
P 		1408
(0.1)
P 		1806.2
(3)
P 		992.8
(-3)
P 		813
avr 1296.4
(-0.3) 		1343.7
(0.1) 		1638.2
(3) 		1023
(-3) 		615

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1462
1 2 3 4 5 6 range
A 894.2
(-3)
P 		1667.6
(2.6)
P 		1701.1
(2.8)
P 		1723.1
(3)
P 		1502.4
(1.4)
P 		936.3
(-2.7)
P 		829
B 1480.8
(-3)
P 		1993.3
(0.5)
P 		1823.9
(-0.6)
P 		1572.3
(-2.4)
P 		2356.6
(3)
P 		1543.9
(-2.6)
P 		876
C 1506.4
(-2.8)
P 		1812.5
(3)
P 		1524.7
(-2.5)
P 		1603.8
(-1)
P 		1497.5
(-3)
P 		1681.1
(0.5)
P 		315
avr 1293.8
(-3) 		1824.5
(3) 		1683.2
(1.4) 		1633.1
(0.8) 		1785.5
(2.6) 		1387.1
(-1.9) 		531
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179293_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14420
Sequence Type Exemplar sequence
Representative Public ID F31D4.9 NCBI
Target Description F31D4.9 /REP_DB=WormBase Gene ID /WP=CE23694 /TR=Q9U3H4 /GB=CAB54227.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075627(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075627 NCBI Caenorhabditis elegans F31D4.9 (F31D4.9) mRNA, complete cds. 11/11 None
F31D4.9 ENSEMBL cdna:known chromosome:CEL140:V:20848882:20849948:-1 gene:F31D4.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041983 6/11 Cross Hyb Matching Probes None
GENEFINDER00000041990 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20848881-20849857(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31D4.9
Entrez Gene 180372 Entrez gene
SwissProt Q9U3H4 EMBL-EBI
WormBase CE23694 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54227 Hypothetical protein F31D4.9 [Caenorhabditis elegans] ref|NP_508028.1| F31D4.9 [Caenorhabditis elegans] 6.0E-48
Sequence
Target Sequence 
>C. ELEGANS:179293_AT
atgtcggaagagctttccggcgtaattattgtactccacaaagagttgagctgtcgaaaa
gagatcaccgacttacaggaaatcagtatcgcattgccggacttgatgctttccccgaaa
agtaaaatcgtctcggaccctgcttcttctaaaatcgatttgaatgataggacaacttgt
agcgcggaacccaatctttttttcgtgatttttttatccaaaaatttaaatttttcgagt
aaagtgttcctctcagctgtcaacaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCGGAAGAGCTTTCCGGCGTAA 175 47 13 Antisense
TCCGGCGTAATTATTGTACTCCACA 546 593 28 Antisense
CTCCACAAAGAGTTGAGCTGTCGAA 232 235 46 Antisense
GAGATCACCGACTTACAGGAAATCA 211 397 73 Antisense
GGAAATCAGTATCGCATTGCCGGAC 701 525 90 Antisense
CGCATTGCCGGACTTGATGCTTTCC 385 255 102 Antisense
GACTTGATGCTTTCCCCGAAAAGTA 689 369 112 Antisense
GACCCTGCTTCTTCTAAAATCGATT 267 381 148 Antisense
CAACTTGTAGCGCGGAACCCAATCT 55 189 185 Antisense
TTTCGAGTAAAGTGTTCCTCTCAGC 652 613 245 Antisense
TGTTCCTCTCAGCTGTCAACAACAA 623 561 257 Antisense
Sequence Source Affymetrix Proprietary Database