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[179292_at]

Description R105.1 /REP_DB=WormBase Gene ID /WP=CE07451 /TR=Q21897 /GB=AAA96168.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 6.7
(-3)
A 		20.8
(0.1)
A 		17.2
(-0.7)
A 		34.4
(3)
A 		28
B 10.1
(-0.4)
A 		2.8
(-2.9)
A 		20.2
(3)
A 		2.4
(-3)
A 		18
C 14.5
(-1.6)
A 		7.4
(-2.5)
A 		3.4
(-3)
A 		52.4
(3)
A 		49
avr 10.4
(-3) 		10.3
(-3) 		13.6
(-2) 		29.7
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 12.5
(-1.1)
A 		6.4
(-2.1)
A 		36.4
(3)
M 		1.2
(-3)
A 		29.4
(1.8)
M 		3.5
(-2.6)
A 		35
B 3
(-3)
A 		27.9
(3)
A 		3.5
(-2.9)
A 		6.1
(-2.3)
A 		20.2
(1.1)
A 		3.5
(-2.9)
A 		25
C 13.2
(-1.6)
A 		21.6
(-0.6)
A 		6.5
(-2.4)
A 		51.9
(3)
P 		1.7
(-2.9)
A 		1.1
(-3)
A 		51
avr 9.6
(-0.6) 		18.6
(2.6) 		15.5
(1.5) 		19.7
(3) 		17.1
(2.1) 		2.7
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.4
(-3)
A 		4.5
(1.8)
A 		4.5
(1.8)
A 		5
(3)
A 		3
B 3.2
(0.9)
A 		0.7
(-2.7)
A 		4.7
(3)
A 		0.5
(-3)
A 		4
C 4.8
(-0.2)
A 		2.1
(-2.3)
A 		1.2
(-3)
A 		8.8
(3)
A 		8
avr 3.5
(-0.3) 		2.4
(-3) 		3.5
(-0.3) 		4.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 2.3
(-1.6)
A 		2.3
(-1.6)
A 		7.9
(2.3)
M 		0.3
(-3)
A 		8.9
(3)
M 		0.9
(-2.6)
A 		9
B 1.1
(-2.9)
A 		9.3
(3)
A 		0.9
(-3)
A 		1.6
(-2.5)
A 		8.2
(2.2)
A 		1.3
(-2.7)
A 		8
C 4.9
(-0.3)
A 		6.6
(0.7)
A 		1.6
(-2.3)
A 		10.4
(3)
P 		0.5
(-2.9)
A 		0.4
(-3)
A 		10
avr 2.8
(-0.8) 		6.1
(3) 		3.5
(0) 		4.1
(0.7) 		5.9
(2.8) 		0.9
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179292_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10583
Sequence Type Exemplar sequence
Representative Public ID R105.1 NCBI
Target Description R105.1 /REP_DB=WormBase Gene ID /WP=CE07451 /TR=Q21897 /GB=AAA96168.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068200(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068200 NCBI Caenorhabditis elegans R105.1 (R105.1) mRNA, complete cds. 11/11 None
SNAP00000002619 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4636320:4636961:1 9/11 None
GENEFINDER00000002625 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4633756:4638338:1 11/11 None
R105.1 ENSEMBL cdna:known chromosome:CEL140:IV:4633756:4637935:1 gene:R105.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002618 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4633761-4637941(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R105.1
Entrez Gene 187895 Entrez gene
SwissProt Q21897 EMBL-EBI
WormBase CE07451 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96168 Hypothetical protein R105.1 [Caenorhabditis elegans] ref|NP_500601.1| R105.1 [Caenorhabditis elegans] 0.0
blast AAA96168 Hypothetical protein R105.1 [Caenorhabditis elegans] ref|NP_500601.1| R105.1 [Caenorhabditis elegans] 7.0E-78
blast AAF39966 Hypothetical protein T02H6.7 [Caenorhabditis elegans] ref|NP_493790.1| T02H6.7 [Caenorhabditis elegans] 3.0E-36
blast AAF39961 Hypothetical protein T02H6.4 [Caenorhabditis elegans] ref|NP_493793.1| T02H6.4 [Caenorhabditis elegans] 2.0E-30
blast AAF39966 Hypothetical protein T02H6.7 [Caenorhabditis elegans] ref|NP_493790.1| T02H6.7 [Caenorhabditis elegans] 2.0E-29
blast AAF39961 Hypothetical protein T02H6.4 [Caenorhabditis elegans] ref|NP_493793.1| T02H6.4 [Caenorhabditis elegans] 9.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 3.0E-124
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 5.5E-21
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 1.1E-25
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 3.7E-98
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 5.5E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500601.1 2 4-21,280-302
R105.1 2 4-21,280-302
GENEFINDER00000002625 2 4-21,272-294
Sequence
Target Sequence 
>C. ELEGANS:179292_AT
ttctacactactgcccatgggaatttacccacgcgggaggactatattgcatgtcctaaa
ggctcagtcatcaacggattccaactcaaacttgaaacgaaacgaggcgttttgagccta
gatcatggtgtcactgaactgatttttttctgcaatccaccggacggaaataccctaagc
atcgataacaaaattgtcatttacaatgattcgccatatggatactggagatcgattcaa
tggtgtcccaaaggatctgttatcattggaatcacagaaaaaatcgattccgaaaaattt
gacaacgccggtattaccaactttggtgctaggtgcggacgcccagaagacagaactgaa
caaccatcttttctctttggtatggtggaatataacataacttttataatttctgcatgt
tcagaatgttcaaatctagaatgttcaaatagcaacactttgaacgcagcgcaattgaag
tatgaaaaagtcacagcgaagatgtacatttctcaagtgcacttgtcatggttttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTACACTACTGCCCATGGGAATT 91 691 919 Antisense
TACCCACGCGGGAGGACTATATTGC 369 649 944 Antisense
GGCTCAGTCATCAACGGATTCCAAC 474 539 979 Antisense
TGAGCCTAGATCATGGTGTCACTGA 152 569 1031 Antisense
TTTTTCTGCAATCCACCGGACGGAA 167 651 1063 Antisense
GGACGGAAATACCCTAAGCATCGAT 84 525 1080 Antisense
GAGATCGATTCAATGGTGTCCCAAA 118 395 1146 Antisense
AACTTTGGTGCTAGGTGCGGACGCC 534 137 1237 Antisense
ACTGAACAACCATCTTTTCTCTTTG 73 93 1273 Antisense
GCAACACTTTGAACGCAGCGCAATT 207 319 1370 Antisense
TCAAGTGCACTTGTCATGGTTTTGT 194 633 1431 Antisense
Sequence Source Affymetrix Proprietary Database