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[179291_at]

Description F32G8.2 /REP_DB=WormBase Gene ID /WP=CE05791 /TR=Q19976 /GB=CAA96646.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 11      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 1.3
(-2.8)
A 		1.3
(-2.8)
A 		1.2
(-3)
A 		4.9
(3)
A 		4
B 21.5
(1.7)
A 		2.3
(-3)
A 		2.2
(-3)
A 		26.6
(3)
A 		24
C 0.8
(-3)
A 		20.1
(0.1)
A 		1.4
(-2.9)
A 		37.6
(3)
A 		37
avr 7.9
(-1.2) 		7.9
(-1.2) 		1.6
(-3) 		23
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 0.7
(-3)
A 		2.2
(-2.9)
A 		1.5
(-3)
A 		144.5
(3)
A 		142.3
(2.9)
P 		2
(-2.9)
A 		144
B 1.3
(-3)
A 		1.8
(-3)
A 		6
(-2.8)
A 		145.3
(3)
P 		123.7
(2.1)
P 		13.6
(-2.5)
A 		144
C 1.4
(-3)
A 		2.5
(-3)
A 		1.9
(-3)
A 		167.3
(3)
P 		138.2
(1.9)
P 		22.1
(-2.3)
A 		166
avr 1.1
(-3) 		2.2
(-3) 		3.1
(-2.9) 		152.4
(3) 		134.7
(2.3) 		12.6
(-2.5) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.5
(0)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.7
(3)
A 		0
B 6.9
(3)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		5.7
(1.9)
A 		6
C 0.3
(-3)
A 		5.8
(2.5)
A 		0.5
(-2.8)
A 		6.3
(3)
A 		6
avr 2.6
(0.5) 		2.2
(-0.2) 		0.4
(-3) 		4.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 0.1
(-3)
A 		0.8
(-2.9)
A 		0.3
(-3)
A 		36.6
(2.1)
A 		42.9
(3)
P 		0.5
(-2.9)
A 		43
B 0.4
(-3)
A 		0.6
(-3)
A 		1.5
(-2.9)
A 		38.5
(1.6)
P 		50.2
(3)
P 		5.1
(-2.4)
A 		50
C 0.5
(-3)
A 		0.8
(-3)
A 		0.5
(-3)
A 		33.6
(1.5)
P 		44.7
(3)
P 		7.4
(-2.1)
A 		44
avr 0.3
(-3) 		0.7
(-2.9) 		0.8
(-2.9) 		36.2
(1.7) 		45.9
(3) 		4.3
(-2.5) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179291_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11589
Sequence Type Exemplar sequence
Representative Public ID F32G8.2 NCBI
Target Description F32G8.2 /REP_DB=WormBase Gene ID /WP=CE05791 /TR=Q19976 /GB=CAA96646.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073305(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073305 NCBI Caenorhabditis elegans F32G8.2 (F32G8.2) mRNA, complete cds. 11/11 None
GENEFINDER00000017276 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10552617:10556640:1 11/11 None
F32G8.2 ENSEMBL cdna:known chromosome:CEL140:V:10552617:10556640:1 gene:F32G8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017270 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10552616-10556640(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32G8.2
Entrez Gene 185211 Entrez gene
SwissProt Q19976 EMBL-EBI
WormBase CE05791 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96646 Hypothetical protein F32G8.2 [Caenorhabditis elegans] ref|NP_505706.1| F32G8.2 [Caenorhabditis elegans] 0.0
blast CAE64841 Hypothetical protein CBG09637 [Caenorhabditis briggsae] 0.0
blast CAE64907 Hypothetical protein CBG09726 [Caenorhabditis briggsae] 1.0E-111
blast CAE64907 Hypothetical protein CBG09726 [Caenorhabditis briggsae] 1.0E-108
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505706.1 1 11-33
F32G8.2 1 11-33
GENEFINDER00000017276 1 11-33
Sequence
Target Sequence 
>C. ELEGANS:179291_AT
atttttcgctttgatgtttttagatgattatggaagccaaaaaagtttgatcgattttga
tttaagtaatatgttcactcgattacaacagaaaggaatatttaaaagcacgacattcat
tgtaacaacctacaatttgtcagccaaagaagtaacagatgagcaatctaaaaatccatt
tttcgcagtcagactttccgacactttaatgaaatctcataagacagaatcacactttct
tcatttaaactttcatagactgttaactacttctaattcttatcatttgataatgaactt
acttgatccaaaaacatcattcaatctttctccattttcattacagtcaacaacaagatc
ttgccaatcagaaaacttatccgacgaaatatgtctttgtatgaaaccgattccagttcc
tgatttcataaatccagttaacataaatttcatgcaaaagctagaaaaggagtttgggaa
ggaaatcaaaatgtacaagtgtgttcaatcatttgaaatgggaaatcaaacggcattctt
tgaatacgacaattcaaaaggaaaaattcgaatcgtggagttgtcggctaaagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTTCGCTTTGATGTTTTTAGAT 649 13 948 Antisense
AGCACGACATTCATTGTAACAACCT 118 77 1054 Antisense
GTAACAACCTACAATTTGTCAGCCA 558 461 1069 Antisense
AATCCATTTTTCGCAGTCAGACTTT 394 167 1120 Antisense
GTCAGACTTTCCGACACTTTAATGA 562 463 1135 Antisense
GAATCACACTTTCTTCATTTAAACT 667 325 1174 Antisense
GACTGTTAACTACTTCTAATTCTTA 608 375 1205 Antisense
AACATCATTCAATCTTTCTCCATTT 32 139 1260 Antisense
TTCTCCATTTTCATTACAGTCAACA 504 693 1275 Antisense
GTCTTTGTATGAAACCGATTCCAGT 642 467 1340 Antisense
AATCGTGGAGTTGTCGGCTAAAGCA 512 167 1518 Antisense
Sequence Source Affymetrix Proprietary Database