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[179288_at]

Description F02D8.3 /REP_DB=WormBase Gene ID /WP=CE09181 /TR=Q19119 /GB=CAB01645.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 21      6grp_cgc > 40      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 145.3
(0.1)
A 		67.8
(-2.8)
A 		62.3
(-3)
A 		223.7
(3)
A 		161
B 113.7
(3)
A 		71.1
(0.2)
A 		22.8
(-3)
A 		104.3
(2.4)
A 		91
C 104.4
(-0.1)
A 		43
(-2.8)
A 		37.7
(-3)
A 		177.2
(3)
A 		140
avr 121.1
(0.8) 		60.6
(-2.1) 		40.9
(-3) 		168.4
(3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 36.6
(-1.8)
A 		97.5
(3)
A 		68.8
(0.7)
A 		82.8
(1.8)
A 		21.4
(-3)
A 		37.4
(-1.7)
A 		76
B 134.5
(3)
A 		21.8
(-3)
A 		25.6
(-2.8)
A 		72.3
(-0.3)
A 		94.2
(0.9)
A 		43.5
(-1.8)
A 		113
C 56.1
(-0.9)
A 		125.7
(3)
A 		100.8
(1.6)
A 		74.4
(0.1)
A 		19.4
(-3)
A 		54.3
(-1)
A 		106
avr 75.7
(2) 		81.7
(3) 		65.1
(0.3) 		76.5
(2.1) 		45
(-3) 		45.1
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 52.9
(3)
A 		14.7
(-3)
A 		16.3
(-2.7)
A 		32.7
(-0.2)
A 		38
B 36.3
(3)
A 		17.6
(-0.6)
A 		5.3
(-3)
A 		22.2
(0.3)
A 		31
C 34.6
(3)
A 		12.4
(-3)
A 		13.1
(-2.8)
A 		29.9
(1.7)
A 		22
avr 41.3
(3) 		14.9
(-2.3) 		11.6
(-3) 		28.3
(0.4) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 6.7
(-3)
A 		34.7
(3)
A 		15
(-1.2)
A 		21
(0.1)
A 		6.5
(-3)
A 		9.1
(-2.4)
A 		28
B 46.8
(3)
A 		7.3
(-2.8)
A 		6.2
(-3)
A 		19.1
(-1.1)
A 		38.3
(1.7)
A 		16.2
(-1.5)
A 		41
C 20.8
(-0.3)
A 		38.3
(3)
A 		25.6
(0.6)
A 		15
(-1.4)
A 		6.3
(-3)
A 		18.2
(-0.8)
A 		32
avr 24.8
(2) 		26.8
(3) 		15.6
(-2.5) 		18.4
(-1.1) 		17
(-1.8) 		14.5
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179288_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13396
Sequence Type Exemplar sequence
Representative Public ID F02D8.3 NCBI
Target Description F02D8.3 /REP_DB=WormBase Gene ID /WP=CE09181 /TR=Q19119 /GB=CAB01645.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074282 NCBI Caenorhabditis elegans X-BoX promoter element regulated family member (xbx-1) (xbx-1) mRNA, complete cds. 11/11 None
SNAP00000004124 ENSEMBL cdna:SNAP chromosome:CEL140:V:14982941:14985212:1 11/11 None
GENEFINDER00000004126 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14981094:14989186:1 11/11 None
F02D8.3 ENSEMBL cdna:known chromosome:CEL140:V:14982941:14985212:1 gene:F02D8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14982940-14985212(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol xbx-1
Ensembl F02D8.3
Entrez Gene 184080 Entrez gene
SwissProt Q19119 EMBL-EBI
WormBase CE09181 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1606176_AT similar to dynein 2 light intermediate chain isoform 2 cfa
CANINE_2:CFA.3317.1.S1_S_AT similar to dynein 2 light intermediate chain isoform 2 cfa
CANINE_2:CFAAFFX.4621.1.S1_AT similar to dynein 2 light intermediate chain isoform 2 cfa
CANINE_2:CFAAFFX.4623.1.S1_AT similar to dynein 2 light intermediate chain isoform 2 cfa
CANINE_2:CFAAFFX.4623.1.S1_S_AT similar to dynein 2 light intermediate chain isoform 2 cfa
DROSOPHILA_2:1634763_AT dm
DROSGENOME1:146088_AT dm
CHICKEN:GGA.5484.1.S1_AT dynein 2 light intermediate chain gga
CHICKEN:GGAAFFX.20193.1.S1_AT dynein 2 light intermediate chain gga
HG-U95AV2:37197_S_AT dynein 2 light intermediate chain hs
HG-U133A:203763_AT dynein 2 light intermediate chain hs
HG-U133_PLUS_2:203763_AT dynein 2 light intermediate chain hs
HG-U133A_2:203763_AT dynein 2 light intermediate chain hs
HG-U133_PLUS_2:203762_S_AT dynein 2 light intermediate chain hs
HG-U133A:203762_S_AT dynein 2 light intermediate chain hs
HG-U133A_2:203762_S_AT dynein 2 light intermediate chain hs
HU35KSUBA:RC_AA450294_S_AT dynein 2 light intermediate chain hs
HU35KSUBA:AA446139_AT dynein 2 light intermediate chain hs
U133_X3P:G7706299_3P_AT dynein 2 light intermediate chain hs
U133_X3P:HS2.7627.2.S1_3P_S_AT dynein 2 light intermediate chain hs
U133_X3P:HS.309257.0.A1_3P_AT dynein 2 light intermediate chain hs
HG-U133_PLUS_2:1554324_S_AT dynein 2 light intermediate chain hs
HG-U133_PLUS_2:241757_X_AT dynein 2 light intermediate chain hs
HG-U133B:241757_X_AT dynein 2 light intermediate chain hs
HG-U95AV2:37198_R_AT dynein 2 light intermediate chain hs
HG-U95AV2:37199_AT dynein 2 light intermediate chain hs
HG-U95B:52347_AT dynein 2 light intermediate chain hs
HG-U95C:61062_AT dynein 2 light intermediate chain hs
MOE430B:1428446_AT dynein 2 light intermediate chain mm
MOUSE430_2:1428446_AT dynein 2 light intermediate chain mm
MG-U74BV2:162820_I_AT dynein 2 light intermediate chain mm
MU19KSUBB:TC27577_AT Dynein 2 light intermediate chain, mRNA (cDNA clone MGC:7211 IMAGE:3482503) mm
MU19KSUBC:TC40904_AT Dynein 2 light intermediate chain, mRNA (cDNA clone MGC:7211 IMAGE:3482503) mm
RG-U34B:RC_AA996695_F_AT similar to Dynein 2 light intermediate chain (predicted) rn
RG-U34B:RC_AA996695_I_AT similar to Dynein 2 light intermediate chain (predicted) rn
RG-U34C:RC_AI177135_AT similar to Dynein 2 light intermediate chain (predicted) rn
RAE230A:1374573_AT similar to Dynein 2 light intermediate chain (predicted) rn
RAT230_2:1374573_AT similar to Dynein 2 light intermediate chain (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_506683 X-BoX promoter element regulated family member (xbx-1) [Caenorhabditis elegans] 0.0
blast CAB01645 Hypothetical protein F02D8.3 [Caenorhabditis elegans] 0.0
blast CAE66345 Hypothetical protein CBG11597 [Caenorhabditis briggsae] 1.0E-175
blast NP_506683 X-BoX promoter element regulated family member (xbx-1) [Caenorhabditis elegans] 1.0E-169
blast CAB01645 Hypothetical protein F02D8.3 [Caenorhabditis elegans] 1.0E-166
blast CAB01666 Hypothetical protein F02D8.4 [Caenorhabditis elegans] emb|CAB01647.2| Hypothetical protein F02D8.4 [Caenorhabditis elegans] 1.0E-161
blast CAB01645 Hypothetical protein F02D8.3 [Caenorhabditis elegans] 1.0E-157
Protein Domains
Database ID Description E-Value
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 1.8E-67
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 5.1E-23
Sequence
Target Sequence 
>C. ELEGANS:179288_AT
gcgtctccgcctcgaaaaatacgacgatggaagtttgaagatgtgcaatccatgtcctat
accggtgactattgtcgcttcgaaatacgatgaatttcaaaattttgaatctgaaaaacg
acggcatctttgtcagtttcttcgattcctcgcctattcgtatggagcgaatttgatgat
gttttcgtcgagaatggaacaatttccgaagctcgtgaagaatatgacgagtcatttcgc
atttggcactgtttgtccgcaaggttatatgactgatcataataaaccaatgtttgtgaa
atgcggttttgatagtttagagtctattggaatacctcctgcatcagacaattttatggg
agcttcatccccattcaatttatggagagagtcatttatcagcctctggcctcaaaagac
tgggacaattgacattgaggatacaaagaaacaagatccaatgattgatccggtatttaa
agagccgaatattgacaatcttgtggaaatcaagcggaaagaactcaaaaatcacataag
atcaaagagagatcgggaggctgcagaggcacgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTCTCCGCCTCGAAAAATACGAC 185 289 513 Antisense
TGCAATCCATGTCCTATACCGGTGA 185 575 556 Antisense
ATACCGGTGACTATTGTCGCTTCGA 687 21 571 Antisense
AAACGACGGCATCTTTGTCAGTTTC 689 119 628 Antisense
GATTCCTCGCCTATTCGTATGGAGC 130 431 656 Antisense
TTCGCATTTGGCACTGTTTGTCCGC 469 697 748 Antisense
GGAATACCTCCTGCATCAGACAATT 14 533 841 Antisense
AGCTTCATCCCCATTCAATTTATGG 91 79 873 Antisense
GAGAGTCATTTATCAGCCTCTGGCC 559 395 899 Antisense
ATCAGCCTCTGGCCTCAAAAGACTG 42 27 910 Antisense
AGATCGGGAGGCTGCAGAGGCACGT 85 67 1062 Antisense
Sequence Source Affymetrix Proprietary Database