[Home] | [Total List]

[179287_s_at]

Description T22A3.5 /REP_DB=WormBase Gene ID /WP=CE18957 /TR=O01264 /GB=CAB03384.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      6grp_total > 97      4grp_total > 0      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 118.2
(-0.5)
M 		74.3
(-3)
A 		179.2
(3)
P 		166.6
(2.3)
A 		105
B 62.8
(-3)
A 		89
(1.3)
A 		87.9
(1.1)
P 		99.4
(3)
A 		37
C 146.5
(1)
P 		72.2
(-3)
P 		142
(0.8)
P 		183
(3)
A 		111
avr 109.2
(-0.4) 		78.5
(-3) 		136.4
(1.9) 		149.7
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 128.1
(-2.2)
A 		143
(-1.8)
P 		103.7
(-3)
P 		122
(-2.4)
P 		264.6
(2.1)
P 		294.8
(3)
P 		191
B 95
(-3)
A 		175.9
(-0.3)
P 		97.8
(-2.9)
P 		221.6
(1.3)
P 		202.9
(0.7)
P 		272.1
(3)
P 		177
C 101.8
(-3)
P 		116.6
(-2.6)
P 		175.4
(-1.1)
P 		177.5
(-1)
P 		185.9
(-0.8)
P 		331.5
(3)
P 		230
avr 108.3
(-3) 		145.2
(-1.8) 		125.6
(-2.5) 		173.7
(-0.9) 		217.8
(0.4) 		299.5
(3) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 43
(2.2)
M 		16.1
(-3)
A 		46.9
(3)
P 		24.4
(-1.4)
A 		31
B 20
(-3)
A 		22
(3)
A 		20.4
(-1.8)
P 		21.2
(0.6)
A 		2
C 48.5
(2.8)
P 		20.8
(-3)
P 		49.5
(3)
P 		30.8
(-0.9)
A 		29
avr 37.2
(2.5) 		19.6
(-3) 		38.9
(3) 		25.5
(-1.2) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 23.6
(-2.9)
A 		50.9
(-0)
P 		22.6
(-3)
P 		30.9
(-2.1)
P 		79.8
(3)
P 		71.8
(2.2)
P 		57
B 33.1
(-2.3)
A 		58.5
(-0.3)
P 		23.7
(-3)
P 		58.7
(-0.3)
P 		82.4
(1.5)
P 		101.5
(3)
P 		78
C 37.7
(-2.8)
P 		35.6
(-3)
P 		44.7
(-2.3)
P 		35.7
(-3)
P 		60.2
(-1)
P 		111
(3)
P 		75
avr 31.5
(-2.9) 		48.3
(-1.3) 		30.3
(-3) 		41.8
(-1.9) 		74.1
(1.1) 		94.8
(3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179287_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2098
Sequence Type Exemplar sequence
Representative Public ID T22A3.5 NCBI
Target Description T22A3.5 /REP_DB=WormBase Gene ID /WP=CE18957 /TR=O01264 /GB=CAB03384.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060373 NCBI Caenorhabditis elegans PArtner of DroSHa (DRSH-1 interactor) family member (pash-1) (pash-1) mRNA, complete cds. 11/11 None
SNAP00000000338 ENSEMBL cdna:SNAP chromosome:CEL140:I:10606831:10614469:1 10/11 None
GENEFINDER00000000342 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10606831:10614469:1 10/11 None
T22A3.5 ENSEMBL cdna:known chromosome:CEL140:I:10606831:10614725:1 gene:T22A3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10606761-10614400(+) 97.51 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pash-1
Ensembl T22A3.5
Entrez Gene 172950 Entrez gene
SwissProt O01264 EMBL-EBI
WormBase CE18957 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591205_AT similar to DiGeorge syndrome critical region gene 8 cfa
CANINE_2:CFA.9015.1.A1_AT similar to DiGeorge syndrome critical region gene 8 cfa
CANINE_2:CFAAFFX.21901.1.S1_AT similar to DiGeorge syndrome critical region gene 8 cfa
DROSOPHILA_2:1637101_AT partner of drosha dm
DROSGENOME1:154141_AT partner of drosha dm
CHICKEN:GGA.12473.1.S1_AT DiGeorge syndrome critical region gene 8 gga
CHICKEN:GGAAFFX.25377.1.S1_S_AT DiGeorge syndrome critical region gene 8 gga
HU35KSUBA:RC_AA243562_AT DiGeorge syndrome critical region gene 8 hs
HU35KSUBC:RC_W93342_AT DiGeorge syndrome critical region gene 8 hs
HG-U133A:219811_AT DiGeorge syndrome critical region gene 8 hs
HG-U133_PLUS_2:219811_AT DiGeorge syndrome critical region gene 8 hs
HG-FOCUS:219811_AT DiGeorge syndrome critical region gene 8 hs
HG-U133A_2:219811_AT DiGeorge syndrome critical region gene 8 hs
HG-U133A:218650_AT DiGeorge syndrome critical region gene 8 hs
HG-U133_PLUS_2:218650_AT DiGeorge syndrome critical region gene 8 hs
HG-U133A_2:218650_AT DiGeorge syndrome critical region gene 8 hs
U133_X3P:G12232458_3P_S_AT DiGeorge syndrome critical region gene 8 hs
U133_X3P:G12225241_3P_X_AT DiGeorge syndrome critical region gene 8 hs
U133_X3P:G12225241_3P_AT DiGeorge syndrome critical region gene 8 hs
HG-U95B:50886_AT DiGeorge syndrome critical region gene 8 hs
HG-U133A_2:64474_G_AT DiGeorge syndrome critical region gene 8 hs
HG-U133_PLUS_2:64474_G_AT DiGeorge syndrome critical region gene 8 hs
HG-U133A:64474_G_AT DiGeorge syndrome critical region gene 8 hs
HG-U95C:64474_G_AT DiGeorge syndrome critical region gene 8 hs
HG-U95E:73323_S_AT DiGeorge syndrome critical region gene 8 hs
HG-U133A_2:91617_AT DiGeorge syndrome critical region gene 8 hs
HG-U133_PLUS_2:91617_AT DiGeorge syndrome critical region gene 8 hs
HG-U133A:91617_AT DiGeorge syndrome critical region gene 8 hs
HG-U95E:91617_AT DiGeorge syndrome critical region gene 8 hs
HG-U95C:64473_AT DiGeorge syndrome critical region gene 8 hs
HG-U95E:73321_AT DiGeorge syndrome critical region gene 8 hs
HG-U95D:77598_AT DiGeorge syndrome critical region gene 8 hs
MOUSE430_2:1422981_AT DiGeorge syndrome critical region gene 8 mm
MOE430A:1422981_AT DiGeorge syndrome critical region gene 8 mm
MOUSE430A_2:1422981_AT DiGeorge syndrome critical region gene 8 mm
MG-U74BV2:106196_AT DiGeorge syndrome critical region gene 8 mm
MG-U74BV2:112087_AT DiGeorge syndrome critical region gene 8 mm
MOE430B:1455311_AT DiGeorge syndrome critical region gene 8 mm
MOUSE430_2:1455311_AT DiGeorge syndrome critical region gene 8 mm
MOE430B:1435439_AT DiGeorge syndrome critical region gene 8 mm
MOUSE430_2:1435439_AT DiGeorge syndrome critical region gene 8 mm
MOE430B:1446169_AT DiGeorge syndrome critical region gene 8 mm
MOUSE430_2:1446169_AT DiGeorge syndrome critical region gene 8 mm
MU19KSUBC:TC40681_AT DiGeorge syndrome critical region gene 8 (Dgcr8), mRNA mm
MU19KSUBC:TC42025_AT DiGeorge syndrome critical region gene 8 (Dgcr8), mRNA mm
RAE230B:1380025_AT DiGeorge syndrome critical region gene 8 (predicted) rn
RAT230_2:1380025_AT DiGeorge syndrome critical region gene 8 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3725 double-stranded RNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03384 Hypothetical protein T22A3.5 [Caenorhabditis elegans] ref|NP_492774.1| PArtner of DroSHa (DRSH-1 interactor) family member (pash-1) [Caenorhabditis elegans] 0.0
blast CAE56592 Hypothetical protein CBG24339 [Caenorhabditis briggsae] 0.0
blast CAE56592 Hypothetical protein CBG24339 [Caenorhabditis briggsae] 1.0E-176
blast CAE56592 Hypothetical protein CBG24339 [Caenorhabditis briggsae] 1.0E-147
blast XP_397444 PREDICTED: similar to ENSANGP00000012175 [Apis mellifera] 2.0E-39
blast XP_397444 PREDICTED: similar to ENSANGP00000012175 [Apis mellifera] 4.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 1.1E-4
Pfam IPR001159 EMBL-EBI Double-stranded RNA binding (DsRBD) domain 2.5E-5
Pfam IPR001159 EMBL-EBI Double-stranded RNA binding (DsRBD) domain 2.5E-5
Sequence
Target Sequence 
>C. ELEGANS:179287_S_AT
atcttattttcaggtcgtacgtctcccagatactggaaatctgcttgctccaaacttcat
cgtactctccaaactttcggaagaaatgaagaacatctcactagtctatccacctagaaa
gtttctctatggtctcgcaacgaattctactggaatcaaacatgacatacgaaatgtgct
aactcaaacattgatggcaactctgcctccaccaccacctcaattctttccaatgattgg
tggtcctccattgatgcatccaacattttccacgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTATTTTCAGGTCGTACGTCTC 398 31 1980 Antisense
TCGTACGTCTCCCAGATACTGGAAA 685 603 1994 Antisense
TGGAAATCTGCTTGCTCCAAACTTC 32 549 2013 Antisense
TCATCGTACTCTCCAAACTTTCGGA 644 621 2036 Antisense
ACATCTCACTAGTCTATCCACCTAG 673 105 2072 Antisense
GAAAGTTTCTCTATGGTCTCGCAAC 698 359 2096 Antisense
TGGTCTCGCAACGAATTCTACTGGA 516 551 2109 Antisense
ACATTGATGGCAACTCTGCCTCCAC 357 105 2167 Antisense
ACCACCTCAATTCTTTCCAATGATT 474 85 2193 Antisense
GATTGGTGGTCCTCCATTGATGCAT 618 435 2214 Antisense
TGATGCATCCAACATTTTCCACGTC 35 567 2231 Antisense
Sequence Source Affymetrix Proprietary Database