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[179286_at]

Description F26F2.7 /REP_DB=WormBase Gene ID /WP=CE19819 /TR=Q9U3H8 /GB=CAB62802.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 07      4grp_high_8_8 > 25      6grp_total > 04      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 148.6
(1.4)
P 		103
(-3)
P 		138.7
(0.5)
P 		164.6
(3)
A 		62
B 151.7
(3)
P 		125.5
(-0.6)
P 		107.5
(-3)
P 		127
(-0.4)
P 		44
C 147.4
(1.3)
P 		156.8
(3)
P 		123.1
(-3)
P 		130.3
(-1.7)
P 		34
avr 149.2
(3) 		128.4
(-1.8) 		123.1
(-3) 		140.6
(1) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 229.1
(3)
P 		143.9
(-0.7)
P 		91.4
(-2.9)
P 		123
(-1.6)
P 		105.2
(-2.3)
P 		89.2
(-3)
P 		140
B 121.9
(0.3)
P 		154.4
(3)
P 		90.6
(-2.2)
P 		133.2
(1.3)
P 		81.4
(-3)
P 		89.4
(-2.3)
P 		73
C 151.5
(3)
P 		104.9
(-3)
P 		146.8
(2.4)
P 		124
(-0.5)
A 		122.9
(-0.7)
P 		116.9
(-1.5)
P 		47
avr 167.5
(3) 		134.4
(0.1) 		109.6
(-2) 		126.7
(-0.5) 		103.2
(-2.6) 		98.5
(-3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 54.1
(3)
P 		22.4
(-3)
P 		36.3
(-0.4)
P 		24.1
(-2.7)
A 		32
B 48.4
(3)
P 		31
(-1.4)
P 		24.9
(-3)
P 		27.1
(-2.4)
P 		24
C 48.8
(3)
P 		45.1
(2.2)
P 		42.9
(1.7)
P 		22
(-3)
P 		27
avr 50.4
(3) 		32.8
(-1.1) 		34.7
(-0.6) 		24.4
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 42.2
(1.3)
P 		51.2
(3)
P 		19.9
(-3)
P 		31.2
(-0.8)
P 		31.7
(-0.7)
P 		21.7
(-2.7)
P 		31
B 42.4
(1.2)
P 		51.4
(3)
P 		22
(-3)
P 		35.3
(-0.3)
P 		33.1
(-0.7)
P 		33.3
(-0.7)
P 		29
C 56.1
(3)
P 		32
(-1.6)
P 		37.4
(-0.6)
P 		24.9
(-3)
A 		39.8
(-0.1)
P 		39.1
(-0.3)
P 		31
avr 46.9
(3) 		44.9
(2.4) 		26.4
(-3) 		30.5
(-1.8) 		34.9
(-0.5) 		31.4
(-1.5) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179286_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13368
Sequence Type Exemplar sequence
Representative Public ID F26F2.7 NCBI
Target Description F26F2.7 /REP_DB=WormBase Gene ID /WP=CE19819 /TR=Q9U3H8 /GB=CAB62802.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075571(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075571 NCBI Caenorhabditis elegans F26F2.7 (F26F2.7) mRNA, complete cds. 11/11 None
SNAP00000015793 ENSEMBL cdna:SNAP chromosome:CEL140:V:20577626:20589599:1 11/11 None
GENEFINDER00000015801 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20584684:20588124:1 11/11 None
F26F2.7 ENSEMBL cdna:known chromosome:CEL140:V:20579047:20588372:1 gene:F26F2.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20579091-20588124(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26F2.7
Entrez Gene 180347 Entrez gene
SwissProt Q9U3H8 EMBL-EBI
WormBase CE19819 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1640980_AT dm
DROSGENOME1:151925_AT dm
Protein Similarities
Method ID Description E-Value
blast CAB62802 Hypothetical protein F26F2.7 [Caenorhabditis elegans] ref|NP_507972.1| F26F2.7 [Caenorhabditis elegans] 0.0
blast CAE61669 Hypothetical protein CBG05609 [Caenorhabditis briggsae] 0.0
blast XP_787361 PREDICTED: similar to CG7218-PA [Strongylocentrotus purpuratus] 1.0E-113
blast CAB62802 Hypothetical protein F26F2.7 [Caenorhabditis elegans] ref|NP_507972.1| F26F2.7 [Caenorhabditis elegans] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR008010 EMBL-EBI Eukaryotic membrane protein DUF747 2.5E-49
Pfam IPR008010 EMBL-EBI Eukaryotic membrane protein DUF747 1.0E-126
Pfam IPR008010 EMBL-EBI Eukaryotic membrane protein DUF747 2.5E-49
Pfam IPR008010 EMBL-EBI Eukaryotic membrane protein DUF747 1.0E-126
Pfam IPR008010 EMBL-EBI Eukaryotic membrane protein DUF747 2.3E-46
Pfam IPR008010 EMBL-EBI Eukaryotic membrane protein DUF747 1.5E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507972.1 5 194-216,306-328,377-399,470-487,497-519
F26F2.7 5 194-216,306-328,377-399,470-487,497-519
SNAP00000015793 5 320-342,432-454,503-525,596-613,623-645
Sequence
Target Sequence 
>C. ELEGANS:179286_AT
aatgctgggtcaagcttgccatcacgtcaaaagattccgggatattcaggctcgcgccga
atttgagctatttaggaagcgaatggtggagaaaaagagcaaatcggcgcccaactcgcc
gcgcatgtcacttatcgattttacagacgttctccatcaaccggctgctggaaaaggctt
caccgtatccgatatgctgagccaatgggaagagctccagccgagcttgctttcttcgga
aatccggcgaagcacggaccgcgagacggcggtttctcatttgacggctagaagtgatga
acgaacgccccgaagagctgtgagcatggctcatattccgagacgagaccgcagcgaacc
accaccggctccatccatggaccaggatccgcaactggataccgaggaccccgtcgtcac
tgaaaacaacacaaactccaactcagaacaggcgtcaccggtcaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCTGGGTCAAGCTTGCCATCAC 130 165 1560 Antisense
AAGATTCCGGGATATTCAGGCTCGC 137 151 1590 Antisense
CCGCGCATGTCACTTATCGATTTTA 230 263 1678 Antisense
TTCTCCATCAACCGGCTGCTGGAAA 4 695 1709 Antisense
GAAAAGGCTTCACCGTATCCGATAT 137 355 1730 Antisense
AGCCGAGCTTGCTTTCTTCGGAAAT 702 81 1778 Antisense
GGAAATCCGGCGAAGCACGGACCGC 609 525 1797 Antisense
GCGAGACGGCGGTTTCTCATTTGAC 612 287 1820 Antisense
ATATTCCGAGACGAGACCGCAGCGA 257 19 1892 Antisense
CTCCATCCATGGACCAGGATCCGCA 10 237 1928 Antisense
TCAGAACAGGCGTCACCGGTCAAAA 286 623 2002 Antisense
Sequence Source Affymetrix Proprietary Database