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[179285_at]

Description ZK669.3 /REP_DB=WormBase Gene ID /WP=CE01114 /TR=Q23570 /GB=CAA85464.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 91      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 90      6grp_total > 93      4grp_total > 03      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 339
1 2 3 4 range
A 109.5
(-1.9)
P 		64
(-2.9)
P 		57.7
(-3)
P 		340.9
(3)
P 		283
B 114.1
(-1.9)
P 		63.7
(-3)
P 		88.7
(-2.5)
P 		342.6
(3)
P 		279
C 104.3
(-2.2)
P 		58.6
(-3)
P 		57.2
(-3)
P 		396.4
(3)
P 		339
avr 109.3
(-2) 		62.1
(-3) 		67.9
(-2.9) 		360
(3) 		298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 328
1 2 3 4 5 6 range
A 146.6
(-0.9)
P 		142.7
(-1)
P 		164.6
(-0.3)
P 		124.9
(-1.5)
P 		269.1
(3)
P 		78.7
(-3)
P 		190
B 134.5
(-2)
P 		209.7
(-0.5)
P 		85.6
(-2.9)
P 		81.2
(-3)
P 		390.3
(3)
P 		112
(-2.4)
P 		309
C 88
(-2.4)
P 		230
(0.7)
P 		62.6
(-3)
P 		99.2
(-2.2)
P 		331.9
(3)
P 		87.4
(-2.4)
P 		269
avr 123
(-2.2) 		194.1
(-0.4) 		104.3
(-2.7) 		101.8
(-2.8) 		330.4
(3) 		92.7
(-3) 		238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 39.9
(1.3)
P 		13.9
(-3)
P 		15.1
(-2.8)
P 		49.9
(3)
P 		36
B 36.4
(-0.8)
P 		15.7
(-3)
P 		20.6
(-2.5)
P 		73
(3)
P 		57
C 34.5
(-0.9)
P 		16.9
(-3)
P 		19.9
(-2.6)
P 		66.8
(3)
P 		50
avr 36.9
(-0.3) 		15.5
(-3) 		18.5
(-2.6) 		63.2
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 27
(-2.2)
P 		50.8
(0.1)
P 		35.8
(-1.4)
P 		31.7
(-1.8)
P 		81.2
(3)
P 		19.2
(-3)
P 		62
B 46.8
(-1.9)
P 		69.8
(-0.9)
P 		20.8
(-3)
P 		21.5
(-3)
P 		158.6
(3)
P 		41.8
(-2.1)
P 		138
C 32.6
(-1.9)
P 		70.2
(0.6)
P 		15.9
(-3)
P 		20
(-2.7)
P 		107.4
(3)
P 		29.2
(-2.1)
P 		92
avr 35.5
(-2.3) 		63.6
(-0.4) 		24.2
(-3) 		24.4
(-3) 		115.7
(3) 		30.1
(-2.6) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179285_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4309
Sequence Type Exemplar sequence
Representative Public ID ZK669.3 NCBI
Target Description ZK669.3 /REP_DB=WormBase Gene ID /WP=CE01114 /TR=Q23570 /GB=CAA85464.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063268(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063268 NCBI Caenorhabditis elegans ZK669.3 (ZK669.3) mRNA, complete cds. 11/11 None
SNAP00000000892 ENSEMBL cdna:SNAP chromosome:CEL140:II:7941093:7942487:1 11/11 None
GENEFINDER00000000898 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7941093:7942487:1 11/11 None
ZK669.3 ENSEMBL cdna:known chromosome:CEL140:II:7941077:7942487:1 gene:ZK669.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7941089-7942484(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK669.3
Entrez Gene 191388 Entrez gene
SwissProt Q23570 EMBL-EBI
WormBase CE01114 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85464 Hypothetical protein ZK669.3 [Caenorhabditis elegans] ref|NP_495669.1| ZK669.3 [Caenorhabditis elegans] 1.0E-132
blast CAE59816 Hypothetical protein CBG03282 [Caenorhabditis briggsae] 1.0E-106
blast CAA85467 Hypothetical protein ZK669.2 [Caenorhabditis elegans] ref|NP_495668.1| ZK669.2 [Caenorhabditis elegans] 9.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 1.1E-57
Sequence
Target Sequence 
>C. ELEGANS:179285_AT
caacctgtgtagactctgaaagtgctgatgacgttgtatgtgattgccatcacggaaatc
gagaatgtcttctaaatcaattacaagcatgtgtcatagaggcacttccaaattttgaag
attatatggaagttgtgacgtgtatccaaggaaaacaaaatataagtatggctgcagaag
tttgttttgaaggaccaacgaagcttgatagaacaaaaatgatggaatgtgccgaaagtc
gtcatggccgaaaactattcagcgatcaagaaaatattgttgctcaaatggcaccagaga
tggattgggctccatggattttaatcaatggaactcgatacaaagaagccgaggaagatt
tgtggcaattcctttgtgatcgattcatcgatcctcgacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACCTGTGTAGACTCTGAAAGTGC 406 185 239 Antisense
GCTGATGACGTTGTATGTGATTGCC 140 295 262 Antisense
GTGATTGCCATCACGGAAATCGAGA 586 483 278 Antisense
GCATGTGTCATAGAGGCACTTCCAA 320 311 325 Antisense
GGAAGTTGTGACGTGTATCCAAGGA 32 533 366 Antisense
GTATGGCTGCAGAAGTTTGTTTTGA 681 455 404 Antisense
ATGTGCCGAAAGTCGTCATGGCCGA 50 49 465 Antisense
GTCATGGCCGAAAACTATTCAGCGA 252 465 479 Antisense
TGGCACCAGAGATGGATTGGGCTCC 145 547 527 Antisense
GTGGCAATTCCTTTGTGATCGATTC 467 491 600 Antisense
GTGATCGATTCATCGATCCTCGACC 99 485 614 Antisense
Sequence Source Affymetrix Proprietary Database