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[179284_at]

Description T28C6.3 /REP_DB=WormBase Gene ID /WP=CE03748 /TR=Q22845 /GB=CAA90994.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 43      6grp_total > 54      4grp_total > 02      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 28.1
(-2.5)
A 		104.5
(0.3)
A 		14.8
(-3)
A 		175.6
(3)
P 		161
B 78
(0.2)
M 		35.6
(-3)
A 		96
(1.5)
A 		116
(3)
P 		80
C 115.4
(-1.5)
A 		65.3
(-3)
A 		89.6
(-2.3)
A 		268.8
(3)
P 		204
avr 73.8
(-2.7) 		68.5
(-2.9) 		66.8
(-3) 		186.8
(3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 79.5
(-3)
P 		91.6
(-0.4)
A 		107.8
(3)
P 		82.9
(-2.3)
P 		94
(0.1)
P 		99
(1.1)
P 		28
B 72.3
(-1.2)
P 		122.7
(3)
P 		95.3
(0.7)
P 		108.9
(1.8)
A 		51.4
(-3)
A 		97.1
(0.8)
P 		71
C 39.4
(-3)
A 		101
(1.2)
P 		126.6
(3)
M 		71.2
(-0.8)
A 		57.6
(-1.7)
A 		77.6
(-0.4)
P 		87
avr 63.7
(-3) 		105.1
(2.4) 		109.9
(3) 		87.7
(0.1) 		67.7
(-2.5) 		91.2
(0.6) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 10.2
(-1.3)
A 		22.7
(2.2)
A 		3.9
(-3)
A 		25.7
(3)
P 		22
B 24.9
(3)
M 		8.8
(-3)
A 		22.3
(2)
A 		24.7
(2.9)
P 		16
C 38.2
(1.4)
A 		18.8
(-3)
A 		31.2
(-0.2)
A 		45.3
(3)
P 		27
avr 24.4
(0) 		16.8
(-3) 		19.1
(-2.1) 		31.9
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 14.6
(-3)
P 		32.6
(3)
A 		23.5
(-0)
P 		21
(-0.9)
P 		28.4
(1.6)
P 		24.1
(0.2)
P 		18
B 25.2
(-1.7)
P 		40.8
(3)
P 		23.1
(-2.3)
P 		28.9
(-0.6)
A 		20.9
(-3)
A 		36.2
(1.6)
P 		20
C 14.6
(-2.9)
A 		30.8
(2.5)
P 		32.2
(3)
M 		14.3
(-3)
A 		18.7
(-1.5)
A 		26
(0.9)
P 		18
avr 18.1
(-3) 		34.7
(3) 		26.3
(-0) 		21.4
(-1.8) 		22.7
(-1.3) 		28.8
(0.9) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179284_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8436
Sequence Type Exemplar sequence
Representative Public ID T28C6.3 NCBI
Target Description T28C6.3 /REP_DB=WormBase Gene ID /WP=CE03748 /TR=Q22845 /GB=CAA90994.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069123(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069123 NCBI Caenorhabditis elegans T28C6.3 (T28C6.3) mRNA, complete cds. 11/11 None
SNAP00000005652 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8820640:8821146:1 9/11 None
GENEFINDER00000005659 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8820338:8821146:1 11/11 None
T28C6.3 ENSEMBL cdna:known chromosome:CEL140:IV:8820338:8821146:1 gene:T28C6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8820343-8821152(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28C6.3
Entrez Gene 189035 Entrez gene
SwissProt Q22845 EMBL-EBI
WormBase CE03748 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90994 Hypothetical protein T28C6.3 [Caenorhabditis elegans] ref|NP_501524.1| T28C6.3 [Caenorhabditis elegans] 5.0E-77
blast CAA90994 Hypothetical protein T28C6.3 [Caenorhabditis elegans] ref|NP_501524.1| T28C6.3 [Caenorhabditis elegans] 3.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501524.1 1 170-192
T28C6.3 1 170-192
SNAP00000005652 1 138-160
GENEFINDER00000005659 1 170-192
Sequence
Target Sequence 
>C. ELEGANS:179284_AT
gtcgaacatttctgagactgccataaaaaacaacaataatcaggaactaggtggtgccac
aaagagaaacgaaaatgatgccactacgtttacaatgccaataggaatccaagagaaatt
ggagattttaaagaagcaagatgtccaactccaagaagctcttgacatggagctgaagtt
tctggacaccaacgagaaattatttgtcaagactttacatgatgctcaaaagttccacca
agagcccactacttcgtttgcagacgaattggaggagagtgtattgtgcgagtcagaatc
agaatccgatgctttggatgaatcagagtcagaagactctgtagtcaacgaatacgtgaa
agagagtgacgatgaagaggatgacgaggacaaggaagaatatgaagatgaagaaggcaa
atcaataattgaaaaagaagccctcacaatcagccccaactcatgtaattcaaagcacac
cagaaacgtcaccaaaacgagtcaaagttttaacgttttggtatgtattctggtcttggg
actgtacattggatcgtggctgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGAACATTTCTGAGACTGCCATA 154 475 15 Antisense
GATGCCACTACGTTTACAATGCCAA 181 415 91 Antisense
GATGTCCAACTCCAAGAAGCTCTTG 411 409 154 Antisense
GGAGCTGAAGTTTCTGGACACCAAC 510 521 183 Antisense
ACATGATGCTCAAAAGTTCCACCAA 309 107 231 Antisense
GCCCACTACTTCGTTTGCAGACGAA 336 287 258 Antisense
AAAAAGAAGCCCTCACAATCAGCCC 622 129 446 Antisense
AGCCCCAACTCATGTAATTCAAAGC 687 81 466 Antisense
AAAGCACACCAGAAACGTCACCAAA 554 123 486 Antisense
GGTATGTATTCTGGTCTTGGGACTG 550 503 534 Antisense
GACTGTACATTGGATCGTGGCTGCT 308 375 554 Antisense
Sequence Source Affymetrix Proprietary Database