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[179283_at]

Description C46E1.1 /REP_DB=WormBase Gene ID /WP=CE17556 /TR=O62099 /GB=CAA15511.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 18      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_total > 16      4grp_total > 14      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 266.5
(0.6)
P 		128
(-2.7)
P 		113.5
(-3)
P 		367.1
(3)
P 		254
B 254.7
(1.5)
P 		152.8
(-2.3)
P 		135.4
(-3)
P 		293.1
(3)
P 		158
C 257.4
(2.3)
P 		154.5
(-1.6)
P 		117.4
(-3)
P 		276.2
(3)
P 		159
avr 259.5
(1.3) 		145.1
(-2.3) 		122.1
(-3) 		312.1
(3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 240.2
(3)
P 		222.2
(2.1)
P 		116.3
(-3)
P 		145
(-1.6)
P 		124.6
(-2.6)
P 		146.7
(-1.5)
P 		124
B 283
(3)
P 		205.6
(0.4)
P 		101.7
(-3)
P 		119.9
(-2.4)
P 		146.6
(-1.5)
P 		148.1
(-1.5)
P 		181
C 285.9
(3)
P 		181.9
(-0.1)
P 		163.8
(-0.6)
P 		82.3
(-3)
M 		188.7
(0.1)
P 		147.4
(-1.1)
P 		204
avr 269.7
(3) 		203.2
(0.4) 		127.3
(-2.5) 		115.7
(-3) 		153.3
(-1.5) 		147.4
(-1.8) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 97
(3)
P 		27.8
(-3)
P 		29.7
(-2.8)
P 		53.7
(-0.8)
P 		69
B 81.2
(3)
P 		37.7
(-2.2)
P 		31.4
(-3)
P 		62.5
(0.7)
P 		50
C 85.2
(3)
P 		44.4
(-2.5)
P 		40.9
(-3)
P 		46.6
(-2.2)
P 		44
avr 87.8
(3) 		36.6
(-2.7) 		34
(-3) 		54.3
(-0.7) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 44.3
(-0.9)
P 		79
(3)
P 		25.3
(-3)
P 		36.8
(-1.7)
P 		37.6
(-1.6)
P 		35.7
(-1.8)
P 		54
B 98.5
(3)
P 		68.4
(0.6)
P 		24.7
(-3)
P 		31.8
(-2.4)
P 		59.6
(-0.2)
P 		55.2
(-0.5)
P 		74
C 106
(3)
P 		55.5
(-0.4)
P 		41.7
(-1.3)
P 		16.6
(-3)
M 		61.1
(-0)
P 		49.3
(-0.8)
P 		89
avr 82.9
(3) 		67.6
(1.3) 		30.6
(-2.8) 		28.4
(-3) 		52.8
(-0.3) 		46.7
(-1) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179283_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17390
Sequence Type Exemplar sequence
Representative Public ID C46E1.1 NCBI
Target Description C46E1.1 /REP_DB=WormBase Gene ID /WP=CE17556 /TR=O62099 /GB=CAA15511.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078155 NCBI Caenorhabditis elegans C46E1.1 (C46E1.1) mRNA, complete cds. 11/11 None
GENEFINDER00000007505 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15468319:15470474:1 11/11 None
SNAP00000007499 ENSEMBL cdna:SNAP chromosome:CEL140:X:15468985:15470474:1 11/11 None
C46E1.1 ENSEMBL cdna:known chromosome:CEL140:X:15468976:15470676:1 gene:C46E1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15468984-15470474(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46E1.1
Entrez Gene 183504 Entrez gene
SwissProt O62099 EMBL-EBI
WormBase CE17556 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15511 Hypothetical protein C46E1.1 [Caenorhabditis elegans] ref|NP_510556.1| C46E1.1 [Caenorhabditis elegans] 5.0E-84
blast CAA15511 Hypothetical protein C46E1.1 [Caenorhabditis elegans] ref|NP_510556.1| C46E1.1 [Caenorhabditis elegans] 1.0E-83
blast CAE63317 Hypothetical protein CBG07707 [Caenorhabditis briggsae] 3.0E-71
blast CAE63317 Hypothetical protein CBG07707 [Caenorhabditis briggsae] 7.0E-71
blast AAF46037 CG16752-PA [Drosophila melanogaster] ref|NP_572225.1| CG16752-PA [Drosophila melanogaster] gb|AAM12257.1| RE15519p [Drosophila melanogaster] 1.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000007505 2 2-24,39-61
Sequence
Target Sequence 
>C. ELEGANS:179283_AT
gtcccaacagttccgagatgtcgtacgacaaatgttcactggaaaaatgctcactcatgc
gatccgagataaggataactcaacaacaatgcagcttgtccaaggtgtcactgatcacag
tgatgataaacgtcaatcggttgttttgtgctcggcaaacggaacattggtgtctagcgt
tccagaggagcgggcgaagaaagacaaggccgttcaatgcaatcctgacgttttcgatga
ggagattgaggttccattcgacccattccttgcagatcttgccattattgtcgaaggaca
cgattcacccaagcgatttaaaaactcagattccacatttgattgctcaacacaatgtag
taccgaaatggacaatcacatgttcatcaagcggaaaagttcacttttgcgggcagcgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCCAACAGTTCCGAGATGTCGTA 281 475 15 Antisense
AATGCTCACTCATGCGATCCGAGAT 189 167 60 Antisense
GCTTGTCCAAGGTGTCACTGATCAC 105 307 108 Antisense
GGTGTCTAGCGTTCCAGAGGAGCGG 684 499 183 Antisense
GACAAGGCCGTTCAATGCAATCCTG 634 361 217 Antisense
ATGCAATCCTGACGTTTTCGATGAG 48 45 231 Antisense
GATTGAGGTTCCATTCGACCCATTC 401 423 258 Antisense
CCATTCCTTGCAGATCTTGCCATTA 628 269 277 Antisense
TTGTCGAAGGACACGATTCACCCAA 624 707 302 Antisense
GATTCCACATTTGATTGCTCAACAC 108 433 343 Antisense
AAAGTTCACTTTTGCGGGCAGCGCT 264 123 410 Antisense
Sequence Source Affymetrix Proprietary Database